Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 3.2e-212 741.5 382 100.0
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 3.3e-148 528.9 412 71.1
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 2.2e-128 463.0 366 66.7
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 2.7e-126 456.1 380 63.7
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 8.8e-125 451.1 367 64.6
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 1.6e-118 430.3 381 59.1
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 6.7e-117 424.9 361 61.2
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 7.4e-116 421.4 367 59.4
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 1.3e-115 420.6 363 61.2
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 7.0e-114 414.8 374 58.6
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 7.7e-113 411.4 363 59.8
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 1.7e-112 410.2 383 58.2
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 5.0e-112 408.7 379 57.3
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 1.1e-111 407.5 363 58.7
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 4.7e-110 402.1 341 61.0
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.4e-109 400.6 390 55.1
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.9e-109 399.1 384 55.5
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 2.6e-108 396.4 380 57.4
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.3e-108 396.0 395 54.4
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 8.2e-107 391.3 367 56.9
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 3.1e-106 389.4 368 55.4
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 1.6e-105 387.1 377 57.0
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 1.6e-105 387.1 370 54.6
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 2.6e-105 386.3 381 55.1
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 5.9e-105 385.2 373 56.3
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 5.9e-105 385.2 377 56.5
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 5.9e-105 385.2 368 56.5
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 2.2e-104 383.3 370 54.6
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 2.2e-104 383.3 371 55.3
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 1.1e-103 380.9 368 55.7
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 3.2e-103 379.4 369 55.8
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 9.4e-103 377.9 367 56.4
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 2.1e-102 376.7 369 55.8
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 2.1e-102 376.7 406 53.2
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 3.6e-102 375.9 350 57.1
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 8.0e-102 374.8 368 55.4
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 8.8e-101 371.3 372 53.8
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 5.7e-100 368.6 460 48.3
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 4.1e-98 362.5 369 53.1
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 3.5e-97 359.4 377 50.7
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 4.5e-97 359.0 363 54.3
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 4.5e-97 359.0 364 51.6
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 1.0e-96 357.8 379 52.5
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 2.2e-96 356.7 366 53.3
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 2.2e-96 356.7 345 57.7
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 5.0e-96 355.5 383 50.4
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 1.1e-95 354.4 394 51.3
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 2.1e-94 350.1 374 50.5
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 8.0e-94 348.2 413 48.9
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.4e-93 347.4 420 49.5
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 1.2e-92 344.4 367 51.5
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 5.7e-92 342.0 363 50.1
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 5.7e-92 342.0 363 50.1
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 7.5e-92 341.7 374 49.7
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 9.8e-92 341.3 377 50.4
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 6.3e-91 338.6 385 51.2
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 1.1e-90 337.8 349 52.1
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 7.0e-90 335.1 364 49.5
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 5.9e-89 332.0 363 47.1
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 1.7e-88 330.5 398 46.0
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 1.7e-88 330.5 338 53.0
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 6.6e-88 328.6 416 45.4
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 3.3e-87 326.2 387 47.3
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 3.3e-87 326.2 363 50.4
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 1.8e-85 320.5 318 52.8
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 4.0e-85 319.3 366 50.0
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 2.0e-84 317.0 382 47.1
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 1.3e-83 314.3 378 46.3
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 6.4e-83 312.0 390 47.4
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 8.3e-83 311.6 429 42.7
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 2.4e-82 310.1 363 46.3
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 2.4e-82 310.1 312 54.8
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 4.1e-82 309.3 363 46.0
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 7.0e-82 308.5 389 45.2
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 7.0e-82 308.5 286 58.4
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 1.6e-81 307.4 384 48.4
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 2.0e-81 307.0 317 51.7
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 1.9e-79 300.4 316 52.2
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.4e-77 294.3 298 54.7
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 1.2e-76 291.2 432 40.5
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 1.3e-75 287.7 290 59.3
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 2.2e-75 287.0 364 42.9
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 3.7e-75 286.2 370 45.1
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 3.2e-74 283.1 309 52.4
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 3.2e-74 283.1 309 52.4
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 1.6e-73 280.8 350 47.7
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 2.7e-73 280.0 375 44.0
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 5.6e-71 272.3 374 41.4
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 3.6e-70 269.6 414 40.8
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 8.1e-70 268.5 343 44.3
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 3.3e-63 246.5 361 40.2
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 3.1e-61 240.0 368 38.6
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.7e-56 224.2 173 63.0
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 7.3e-55 218.8 287 46.3
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 2.0e-52 210.7 178 57.3
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 8.4e-51 205.3 411 35.8
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 5.8e-44 182.6 250 42.8
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 2.9e-43 180.3 161 54.0
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 4.3e-39 166.4 146 53.4
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 6.7e-32 142.5 164 52.4
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 3.7e-30 136.7 180 48.3
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 3.1e-29 133.7 137 56.2
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 8.2e-22 109.0 82 59.8
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 8.2e-22 109.0 82 59.8
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 9.0e-21 105.5 357 27.2
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 2.2e-19 100.9 159 40.9
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 1.9e-18 97.8 108 49.1
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 2.5e-18 97.4 157 41.4
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 6.7e-16 89.4 159 41.5
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 1.3e-06 58.5 102 44.1
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 6.3e-06 56.2 61 44.3


User provided reference genes

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