Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 3.6e-183 644.8 333 100.0
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 3.6e-167 591.7 333 91.6
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 9.2e-163 577.0 333 88.9
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.3e-161 573.2 333 88.6
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 9.9e-157 557.0 334 88.0
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 5.4e-139 498.0 337 76.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.6e-138 496.5 337 75.7
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.3e-137 493.4 298 80.5
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 2.3e-137 492.7 315 78.1
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.5e-136 490.0 324 76.5
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.9e-136 489.6 297 81.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.9e-136 489.6 289 84.1
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.3e-135 486.9 300 81.0
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 2.1e-135 486.1 319 77.4
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 3.7e-135 485.3 299 80.9
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 4.8e-135 485.0 276 85.9
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 8.1e-135 484.2 301 80.4
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 8.1e-135 484.2 298 79.9
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.1e-134 483.8 301 81.1
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.1e-134 483.8 310 79.7
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 2.4e-134 482.6 303 78.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 3.1e-134 482.3 281 83.3
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 3.1e-134 482.3 289 83.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 5.3e-134 481.5 276 84.8
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.3e-134 481.5 283 83.0
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.3e-134 481.5 283 83.0
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 6.9e-134 481.1 276 85.1
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 6.9e-134 481.1 319 78.1
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 6.9e-134 481.1 282 83.0
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 9.0e-134 480.7 317 74.8
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.5e-133 479.9 336 74.4
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.0e-133 479.6 301 80.4
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.6e-133 479.2 283 81.6
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 2.6e-133 479.2 341 72.4
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.5e-133 478.4 333 74.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 5.8e-133 478.0 276 84.1
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 5.8e-133 478.0 276 83.7
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 5.8e-133 478.0 276 83.7
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 5.8e-133 478.0 310 78.7
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 1.3e-132 476.9 276 83.7
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.3e-132 476.9 276 83.7
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.3e-132 476.9 283 82.0
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.2e-132 476.1 283 81.6
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.9e-132 475.7 309 79.3
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.9e-132 475.7 276 83.7
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.8e-132 475.3 290 80.3
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 3.8e-132 475.3 292 80.5
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.4e-132 474.6 325 72.9
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 8.4e-132 474.2 276 82.6
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.1e-131 473.8 323 74.6
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.1e-131 473.8 276 83.0
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.1e-131 473.8 298 79.2
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.9e-131 473.0 293 77.8
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 2.5e-131 472.6 276 82.2
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.5e-131 472.6 276 82.6
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.5e-131 472.6 310 78.7
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 2.5e-131 472.6 299 78.9
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 3.2e-131 472.2 302 77.8
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 3.2e-131 472.2 325 75.7
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.2e-131 472.2 316 75.9
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 3.2e-131 472.2 301 78.4
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.5e-131 471.5 278 82.0
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 5.5e-131 471.5 333 72.7
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 9.3e-131 470.7 309 75.1
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.6e-130 469.9 320 73.4
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 1.6e-130 469.9 310 77.1
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.6e-130 469.9 276 81.5
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 2.7e-130 469.2 312 75.0
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 3.5e-130 468.8 305 78.4
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 4.6e-130 468.4 276 81.5
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 6.0e-130 468.0 312 76.9
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 6.0e-130 468.0 333 69.7
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.3e-129 466.8 310 76.5
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.3e-129 466.8 276 80.8
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.3e-129 466.8 334 71.3
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 3.9e-129 465.3 277 80.9
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 3.9e-129 465.3 341 71.8
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 5.1e-129 464.9 277 80.9
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 6.7e-129 464.5 296 79.7
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.1e-128 463.8 316 72.5
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.5e-128 463.4 330 71.8
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.5e-128 463.4 295 76.6
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.9e-128 463.0 327 73.4
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 2.5e-128 462.6 277 80.5
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.5e-128 462.6 317 73.5
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.3e-128 462.2 276 81.2
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 4.3e-128 461.8 271 81.9
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 7.4e-128 461.1 327 70.6
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.6e-128 460.7 326 70.9
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 9.6e-128 460.7 284 78.2
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.6e-127 459.9 276 80.4
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.8e-127 459.1 272 82.4
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.7e-127 458.8 301 74.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 8.2e-127 457.6 274 79.6
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.1e-126 457.2 327 70.6
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.8e-126 456.4 318 73.9
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 9.0e-126 454.1 323 72.4
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.2e-125 453.8 327 69.4
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 3.4e-125 452.2 283 77.0
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 7.6e-125 451.1 276 79.3
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.2e-124 449.5 315 72.1
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 2.2e-124 449.5 327 69.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.1e-123 447.2 331 70.4
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.9e-123 446.4 322 70.5
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.5e-123 446.0 274 78.5
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.2e-122 443.7 274 77.7
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.6e-122 443.4 269 78.4
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.6e-122 443.4 301 73.1
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 4.6e-122 441.8 274 77.7
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 7.9e-122 441.0 310 69.0
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 2.3e-121 439.5 281 73.3
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 3.0e-121 439.1 265 78.9
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.1e-120 437.2 272 76.8
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 7.4e-120 434.5 326 68.4
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.6e-119 433.3 276 77.2
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 8.2e-119 431.0 299 71.2
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.1e-118 429.1 299 71.2
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 6.9e-118 427.9 309 71.2
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 6.9e-118 427.9 274 75.9
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 1.2e-117 427.2 296 74.0
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 7.7e-117 424.5 308 68.8
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 6.5e-116 421.4 282 72.7
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.5e-115 419.5 281 70.5
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 2.7e-114 416.0 299 67.6
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 3.6e-114 415.6 286 74.5
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 6.1e-114 414.8 257 76.7
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 1.8e-113 413.3 270 75.2
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 3.9e-113 412.1 285 71.2
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 3.9e-113 412.1 298 67.1
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 6.7e-113 411.4 310 66.5
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.8e-110 403.3 300 64.3
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 3.1e-110 402.5 290 68.6
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 2.9e-108 396.0 306 66.0
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 6.5e-108 394.8 322 65.5
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.3e-105 386.3 280 72.1
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 9.7e-104 380.9 321 59.5
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 2.1e-98 363.2 275 66.5
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 2.8e-95 352.8 307 58.6
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.2e-93 347.4 274 60.2
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 2.5e-91 339.7 298 56.7
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 4.7e-90 335.5 186 86.6
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.2e-84 316.6 244 70.9
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 6.5e-84 315.1 250 68.8
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 9.8e-80 301.2 354 49.4
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 6.3e-79 298.5 273 50.9
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 4.5e-77 292.4 303 49.8
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.5e-77 292.4 229 66.8
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 4.7e-74 282.3 286 54.5
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-68 263.8 239 61.5
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 8.6e-68 261.5 218 64.7
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.4e-65 254.2 174 74.7
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.2e-62 241.5 224 60.3
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 7.3e-59 231.9 159 72.3
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.8e-57 227.3 123 87.8
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 4.9e-55 219.2 253 51.8
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 2.3e-52 210.3 178 59.6
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 4.3e-51 206.1 175 62.3
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 5.1e-44 182.6 196 53.1
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 9.3e-38 161.8 90 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.5e-37 159.8 138 60.1
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 4.8e-34 149.4 77 92.2
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 9.3e-30 135.2 89 77.5
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.2e-29 134.8 280 30.7
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.7e-28 131.0 193 45.1
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.3e-26 124.8 75 81.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 4.0e-25 119.8 68 86.8
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.2e-22 110.2 164 41.5
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 8.7e-20 102.1 66 80.3
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.2e-15 87.4 83 55.4
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 4.8e-10 69.7 179 27.9
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.1e-09 68.6 81 45.7
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 1.4e-06 58.2 59 45.8


User provided reference genes

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