Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 3.9e-287 990.7 483 100.0
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 3.0e-247 858.2 487 85.2
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 6.5e-242 840.5 487 83.4
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 2.4e-204 715.7 388 86.3
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.7e-186 656.4 490 65.1
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 3.0e-186 655.6 496 64.5
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.1e-185 653.7 491 65.8
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 2.5e-185 652.5 487 66.3
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 6.2e-184 647.9 488 66.4
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 8.1e-184 647.5 448 68.3
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 8.1e-184 647.5 494 63.6
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.1e-183 647.1 453 66.9
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.4e-183 646.7 487 65.9
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 4.0e-183 645.2 475 65.9
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 6.8e-183 644.4 488 65.2
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.2e-182 643.7 474 65.8
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 2.0e-182 642.9 470 66.0
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 3.4e-182 642.1 491 62.5
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 4.4e-182 641.7 492 63.0
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 2.9e-181 639.0 484 65.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 6.4e-181 637.9 481 64.4
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.4e-180 636.0 452 66.6
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.4e-180 636.0 487 64.1
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 7.1e-180 634.4 449 66.1
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 7.1e-180 634.4 463 65.2
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.2e-179 633.6 484 63.6
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 1.6e-179 633.3 489 65.0
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.7e-179 632.5 489 63.0
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 3.9e-178 628.6 491 64.4
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 8.6e-178 627.5 487 63.7
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.5e-177 625.9 488 63.3
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 7.3e-177 624.4 492 63.0
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.2e-175 618.2 426 68.1
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 6.8e-175 617.8 494 63.0
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 6.8e-175 617.8 496 60.3
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.4e-174 615.5 430 68.4
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 6.4e-173 611.3 467 63.2
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.1e-172 610.5 485 62.1
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.4e-172 610.1 485 62.1
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.9e-172 609.8 480 64.2
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.2e-172 609.0 508 60.6
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.6e-171 606.7 542 57.0
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 2.3e-170 602.8 470 61.9
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.5e-169 600.1 490 59.4
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 4.3e-169 598.6 491 62.3
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 5.6e-169 598.2 494 62.3
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 7.3e-169 597.8 496 59.5
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 7.3e-169 597.8 423 66.2
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 7.3e-169 597.8 481 63.2
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 4.7e-168 595.1 538 57.2
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 6.2e-168 594.7 492 61.0
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 8.1e-168 594.3 492 60.8
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 2.4e-167 592.8 495 59.8
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 9.0e-167 590.9 471 61.4
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 1.2e-166 590.5 471 61.6
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 3.4e-166 589.0 496 59.1
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 3.4e-166 589.0 493 59.2
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 5.8e-166 588.2 425 66.4
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 9.9e-166 587.4 490 60.0
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 6.4e-165 584.7 378 71.7
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 1.1e-164 583.9 471 61.8
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.9e-164 583.2 474 61.2
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.9e-164 583.2 459 61.7
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 2.4e-164 582.8 402 66.2
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 3.2e-164 582.4 487 59.8
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.3e-162 577.0 511 57.7
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.3e-162 577.0 476 60.3
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.7e-162 576.6 487 58.9
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.3e-160 570.5 457 61.9
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 4.8e-160 568.5 483 58.4
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.4e-159 567.0 476 56.9
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 2.4e-159 566.2 396 66.9
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 5.8e-158 561.6 499 56.5
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 8.4e-157 557.8 386 67.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.9e-156 556.6 446 61.2
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 4.2e-156 555.4 478 58.2
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 1.8e-154 550.1 463 58.3
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.9e-154 548.9 441 62.1
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 5.1e-154 548.5 509 54.6
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 1.5e-153 547.0 418 62.4
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 8.1e-152 541.2 400 65.8
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 4.5e-150 535.4 403 62.8
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.3e-149 533.9 511 55.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.8e-144 516.2 380 63.4
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.8e-143 513.5 477 55.6
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.2e-142 510.8 455 58.2
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.3e-141 507.3 418 59.8
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.3e-137 492.7 342 69.3
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 1.4e-135 487.3 296 73.3
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 4.2e-132 475.7 480 52.1
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.6e-131 473.8 417 54.7
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 7.9e-131 471.5 392 57.9
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.4e-130 470.7 369 61.5
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.0e-125 454.5 549 47.5
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 2.9e-125 453.0 327 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 6.1e-123 445.3 413 53.0
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 9.7e-121 438.0 372 54.8
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.1e-119 432.6 389 57.6
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.2e-118 431.0 377 53.3
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 8.0e-115 418.3 377 57.3
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.6e-107 394.0 287 66.2
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 6.6e-93 345.5 387 46.8
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 2.8e-91 340.1 345 47.2
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 3.6e-91 339.7 325 52.9
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.1e-87 328.2 246 68.3
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.4e-87 327.8 246 68.3
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 4.1e-87 326.2 244 62.7
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 4.1e-87 326.2 244 62.7
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 2.9e-85 320.1 300 54.0
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 5.6e-84 315.8 233 66.1
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 7.3e-84 315.5 233 66.1
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 7.5e-81 305.4 178 75.8
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 2.1e-67 260.8 375 37.3
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.6e-62 244.6 328 39.0
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.4e-58 231.5 228 52.6
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 4.0e-58 229.9 221 52.9
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 3.8e-56 223.4 185 63.2
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 1.0e-53 215.3 146 69.9
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 7.3e-52 209.1 163 61.3
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 2.4e-39 167.5 106 71.7
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.0e-37 162.2 98 69.4
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 8.1e-35 152.5 304 33.6
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 7.1e-31 139.4 88 72.7
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 6.0e-30 136.3 331 30.2
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 1.1e-26 125.6 73 76.7
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 1.4e-23 115.2 143 45.5
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 4.1e-18 97.1 55 72.7
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.2e-16 91.3 377 24.1
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 1.8e-10 71.6 96 44.8
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 7.7e-09 66.2 96 42.7


User provided reference genes

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