Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 6.7e-171 604.0 315 100.0
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 2.4e-120 436.0 320 74.4
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 3.8e-118 428.7 319 73.7
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 8.8e-115 417.5 310 72.6
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 2.8e-108 396.0 304 71.7
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.4e-75 287.3 268 57.8
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.7e-71 273.1 283 55.5
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.0e-70 271.2 286 55.2
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 3.6e-68 262.7 286 53.8
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 3.2e-64 249.6 293 51.2
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 3.2e-64 249.6 291 49.1
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 4.2e-64 249.2 274 52.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 9.3e-64 248.1 314 48.4
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 7.9e-63 245.0 275 51.6
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 3.9e-62 242.7 280 51.4
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 5.1e-62 242.3 268 51.1
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 6.7e-62 241.9 284 50.4
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 8.7e-62 241.5 320 45.0
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 4.3e-61 239.2 288 49.7
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 5.6e-61 238.8 296 49.3
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 7.4e-61 238.4 281 47.3
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 2.1e-60 236.9 276 52.5
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.2e-60 235.3 276 52.2
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.1e-60 235.0 276 52.2
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.8e-59 233.8 276 52.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.8e-59 233.8 276 52.2
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.1e-59 233.0 275 51.6
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 2.0e-58 230.3 276 51.1
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.0e-58 230.3 302 47.0
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.6e-58 229.9 299 47.2
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 4.5e-58 229.2 318 45.9
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 5.8e-58 228.8 284 46.8
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.6e-58 228.4 300 46.7
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 9.9e-58 228.0 266 47.4
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.7e-57 227.3 268 48.5
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 2.4e-56 223.4 279 47.0
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 2.4e-56 223.4 298 45.3
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.4e-56 223.4 275 46.9
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.6e-55 220.7 279 45.2
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.1e-55 220.3 297 45.8
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 3.5e-55 219.5 270 48.1
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 4.6e-55 219.2 299 48.2
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 7.9e-55 218.4 271 47.6
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 1.0e-54 218.0 268 45.9
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 1.0e-54 218.0 275 45.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 3.9e-54 216.1 268 48.9
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.9e-54 216.1 291 44.3
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 8.7e-54 214.9 285 44.6
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.5e-53 214.2 285 45.6
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.3e-52 211.1 319 43.3
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.3e-52 211.1 296 43.9
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.1e-52 210.3 272 46.0
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 6.2e-52 208.8 282 47.5
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 6.2e-52 208.8 279 47.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 2.4e-51 206.8 312 44.2
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 4.0e-51 206.1 288 44.8
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 5.3e-51 205.7 268 45.5
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 6.9e-51 205.3 286 44.8
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 9.0e-51 204.9 270 45.9
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.5e-50 204.1 297 40.7
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.4e-50 203.0 285 44.9
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 3.4e-50 203.0 285 44.9
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 4.5e-50 202.6 287 44.9
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 7.6e-50 201.8 272 45.2
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.0e-49 201.4 284 41.2
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-49 201.1 282 44.3
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.2e-49 200.3 284 43.7
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 2.9e-49 199.9 314 40.1
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.9e-49 199.9 324 41.0
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 3.8e-49 199.5 306 42.2
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 3.8e-49 199.5 271 46.5
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.8e-49 199.5 268 44.0
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 4.9e-49 199.1 294 41.5
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.1e-48 198.0 284 43.7
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.1e-48 198.0 284 43.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.9e-48 197.2 263 46.8
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.5e-48 195.7 241 47.3
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 7.1e-48 195.3 285 44.9
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 7.1e-48 195.3 281 42.3
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 7.1e-48 195.3 281 42.0
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 9.3e-48 194.9 284 43.3
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-47 194.5 285 41.4
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.6e-47 194.1 254 43.7
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 2.1e-47 193.7 284 41.5
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 2.7e-47 193.4 272 42.6
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 3.5e-47 193.0 298 40.3
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 4.6e-47 192.6 286 42.3
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 4.6e-47 192.6 298 40.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 6.0e-47 192.2 283 41.3
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.0e-46 191.4 297 39.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.0e-46 191.4 297 40.1
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.3e-46 191.0 288 42.4
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 6.7e-46 188.7 268 44.4
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 6.7e-46 188.7 273 40.3
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.5e-45 187.6 305 40.7
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.9e-45 187.2 267 43.4
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.9e-45 187.2 276 44.2
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 2.5e-45 186.8 278 39.9
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 5.7e-45 185.7 297 39.1
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 5.7e-45 185.7 297 39.1
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 6.3e-44 182.2 297 40.4
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.1e-43 181.4 278 39.6
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 9.0e-43 178.3 272 40.4
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 7.6e-42 175.3 266 38.7
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.7e-41 174.1 291 40.2
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.2e-41 173.7 340 37.6
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-40 171.4 293 39.6
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-40 171.4 293 39.6
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 9.4e-40 168.3 283 39.2
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 4.6e-39 166.0 281 39.1
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-38 164.5 283 38.2
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 3.0e-38 163.3 283 41.0
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 5.1e-38 162.5 281 38.1
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.1e-37 161.4 239 44.4
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.5e-37 160.2 276 39.9
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.7e-37 159.1 276 39.5
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 6.3e-36 155.6 280 38.9
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 2.4e-35 153.7 322 36.0
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 5.0e-33 146.0 166 53.0
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 2.2e-28 130.6 252 37.3
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 2.4e-27 127.1 159 47.8
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.9e-24 117.5 247 34.4
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.6e-21 107.1 174 40.8
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.7e-20 104.4 123 48.0
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 2.7e-15 87.0 269 30.1
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 6.3e-12 75.9 163 35.0
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 3.5e-10 70.1 97 44.3
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 1.3e-09 68.2 100 44.0


User provided reference genes

Program Settings