Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007480 Sechium edule HOM05D000083 ORTHO05D003582 2.5e-43 178.3 88 100.0
Sed0020503 Sechium edule HOM05D000083 ORTHO05D003582 3.3e-27 124.8 62 98.4
Sed0024928 Sechium edule HOM05D000083 ORTHO05D003582 2.0e-24 115.5 65 92.3
MELO3C024030.2 Cucumis melo HOM05D000083 ORTHO05D003582 5.8e-24 114.0 67 86.6
ClCG10G011890 Citrullus lanatus HOM05D000083 ORTHO05D003582 1.3e-23 112.8 67 86.6
CsaV3_3G031470 Cucumis sativus L. HOM05D000083 ORTHO05D003582 1.7e-23 112.5 65 89.2
Actinidia04074 Actinidia chinensis HOM05D000083 ORTHO05D003582 2.9e-23 111.7 65 89.2
CANSAT64G2172 Cannabis sativa HOM05D000083 ORTHO05D003582 2.9e-23 111.7 65 87.7
CAN.G624.28 Capsicum annuum HOM05D000083 ORTHO05D003582 2.9e-23 111.7 65 89.2
Peaxi162Scf01172g00034 Petunia axillaris HOM05D000083 ORTHO05D003582 2.9e-23 111.7 65 89.2
Potri.007G070100 Populus trichocarpa HOM05D000083 ORTHO05D003582 2.9e-23 111.7 65 89.2
Thecc.02G160900 Theobroma cacao HOM05D000083 ORTHO05D003582 2.9e-23 111.7 65 89.2
Lalb_Chr03g0024821 Lupinus albus HOM05D000083 ORTHO05D003582 3.8e-23 111.3 65 89.2
Solyc11g033270.2 Solanum lycopersicum HOM05D000083 ORTHO05D003582 3.8e-23 111.3 65 87.7
Sopen11g015750 Solanum pennellii HOM05D000083 ORTHO05D003582 3.8e-23 111.3 65 87.7
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 4.9e-23 110.9 58 94.8
Cc00_g03930 Coffea canephora HOM05D000083 ORTHO05D003582 4.9e-23 110.9 58 94.8
FvH4_4g36790 Fragaria vesca HOM05D000083 ORTHO05D003582 4.9e-23 110.9 60 91.7
FAN07G1039 Fragaria x ananassa HOM05D000083 ORTHO05D003582 4.9e-23 110.9 60 91.7
FAN12G3263 Fragaria x ananassa HOM05D000083 ORTHO05D003582 4.9e-23 110.9 60 91.7
CDE04G1078 Ceratophyllum demersum HOM05D000083 ORTHO05D003582 6.5e-23 110.5 65 87.7
Atru.chr11.1178 Acer truncatum HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Ah.01g012890 Amaranthus hybridus HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
MSTRG.2055 Avicennia marina HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
EL10Ac9g22930 Beta vulgaris HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Cpa.g.sc119.49 Carica papaya HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
AUR62017684 Chenopodium quinoa HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Dinv11712 Davidia involucrata HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Duzib132G0002 Durio zibethinus HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Duzib248G1611 Durio zibethinus HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Eucgr.J00858 Eucalyptus grandis HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Gohir.A03G164300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Gohir.D02G187600 Gossypium hirsutum HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Gorai.005G210100 Gossypium raimondii HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
MD16G1000900 Malus domestica HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Manes.11G101900 Manihot esculenta HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Nn7g37822 Nelumbo nucifera HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Prupe.1G346000 Prunus persica HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
PGR044G0594 Punica granatum HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
SalBow6G1016 Salvia bowleyana HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
SGA_v2.0_scaffold99G29461 Striga asiatica HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
THA.LOC104822679 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
GSVIVG01012031001 Vitis vinifera HOM05D000083 ORTHO05D003582 8.4e-23 110.2 55 98.2
Actinidia04311 Actinidia chinensis HOM05D000083 ORTHO05D003582 1.1e-22 109.8 60 91.7
arahy.Tifrunner.gnm1.ann1.FSDW2L Arachis hypogaea HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
arahy.Tifrunner.gnm1.ann1.ZIJB47 Arachis hypogaea HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Ca_19030_v3 Cicer arietinum L. HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
FAN17G2779 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.1e-22 109.8 55 96.4
Glyma.11G101700 Glycine max HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Glyma.12G027600 Glycine max HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Gohir.A01G013000 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Gohir.D01G014300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Gorai.002G016000 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Lj3g0012190 Lotus japonicus HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Lj3g0024681 Lotus japonicus HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
MD13G1006900 Malus domestica HOM05D000083 ORTHO05D003582 1.1e-22 109.8 55 96.4
Medtr4g075410 Medicago truncatula HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Phvul.011G030800 Phaseolus vulgaris HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
Psat7g176400 Pisum sativum HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
RcHm_v2.0_Chr4g0446521 Rosa chinensis HOM05D000083 ORTHO05D003582 1.1e-22 109.8 55 96.4
TPR.G32329 Trifolium pratense HOM05D000083 ORTHO05D003582 1.1e-22 109.8 54 100.0
TWI53G2094 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 1.1e-22 109.8 55 96.4
Nitab4.5_0011898g0010 Nicotiana tabacum HOM05D000083 ORTHO05D003582 1.4e-22 109.4 83 74.7
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 1.9e-22 109.0 55 96.4
Haze_11720 Corylus avellana HOM05D000083 ORTHO05D003582 1.9e-22 109.0 55 96.4
PSO063G5474 Papaver somniferum HOM05D000083 ORTHO05D003582 1.9e-22 109.0 55 96.4
PSO782G1916 Papaver somniferum HOM05D000083 ORTHO05D003582 1.9e-22 109.0 55 96.4
Sabra07G0058700 Salix brachista HOM05D000083 ORTHO05D003582 1.9e-22 109.0 65 87.7
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 2.5e-22 108.6 54 98.1
Migut.E00615 Erythranthe guttata HOM05D000083 ORTHO05D003582 3.2e-22 108.2 55 96.4
Migut.E00702 Erythranthe guttata HOM05D000083 ORTHO05D003582 3.2e-22 108.2 55 96.4
Lalb_Chr19g0139361 Lupinus albus HOM05D000083 ORTHO05D003582 3.2e-22 108.2 54 98.1
Peaxi162Scf00363g00731 Petunia axillaris HOM05D000083 ORTHO05D003582 3.2e-22 108.2 55 96.4
TAR371G0617 Trochodendron aralioides HOM05D000083 ORTHO05D003582 3.2e-22 108.2 54 98.1
Zm00001eb067530 Zea mays HOM05D000083 ORTHO05D003582 3.2e-22 108.2 55 96.4
Aa31LG10G1090 Aethionema arabicum HOM05D000083 ORTHO05D003582 4.2e-22 107.8 55 96.4
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 5.5e-22 107.5 61 86.9
Os04g0660500 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D003582 7.1e-22 107.1 55 94.5
AL3G25440 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
AT3G13530 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
BcaB04g18769 Brassica carinata HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
BcaC01g03989 Brassica carinata HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
A03p38250 Brassica napus HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
C03p46440 Brassica napus HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
BolC3t16908H Brassica oleracea HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
BraA03t12978Z Brassica rapa HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
Carub.0003s1301 Capsella rubella HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
CARHR088200 Cardamine hirsuta HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
DCAR_023443 Daucus carota HOM05D000083 ORTHO05D003582 9.3e-22 106.7 65 86.2
Thhalv10019926m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
Sp3g11740 Schrenkiella parvula HOM05D000083 ORTHO05D003582 9.3e-22 106.7 55 94.5
Potri.005G094200 Populus trichocarpa HOM05D000083 ORTHO05D003582 1.2e-21 106.3 55 94.5
Medtr4g074875 Medicago truncatula HOM05D000083 ORTHO05D003582 1.6e-21 105.9 54 96.3
Hund24288 Selenicereus undatus HOM05D000083 ORTHO05D003582 1.6e-21 105.9 54 96.3
Sc06g0007920 Simmondsia chinensis HOM05D000083 ORTHO05D003582 1.6e-21 105.9 55 94.5
BcaB03g11558 Brassica carinata HOM05D000083 ORTHO05D003582 2.7e-21 105.1 56 92.9
C03p43230 Brassica napus HOM05D000083 ORTHO05D003582 2.7e-21 105.1 56 92.9
BraA03t12735Z Brassica rapa HOM05D000083 ORTHO05D003582 2.7e-21 105.1 56 92.9
Gohir.D12G137850 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.7e-21 105.1 55 94.5
Gorai.008G149400 Gossypium raimondii HOM05D000083 ORTHO05D003582 2.7e-21 105.1 55 94.5
Nitab4.5_0002113g0210 Nicotiana tabacum HOM05D000083 ORTHO05D003582 3.5e-21 104.8 72 80.6
AT3G07980 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 7.9e-21 103.6 55 92.7
BcaB03g11553 Brassica carinata HOM05D000083 ORTHO05D003582 7.9e-21 103.6 55 92.7
A03p35590 Brassica napus HOM05D000083 ORTHO05D003582 7.9e-21 103.6 55 92.7
BolC3t16592H Brassica oleracea HOM05D000083 ORTHO05D003582 7.9e-21 103.6 55 92.7
Carub.0003s0756 Capsella rubella HOM05D000083 ORTHO05D003582 7.9e-21 103.6 55 92.7
CARHR082720 Cardamine hirsuta HOM05D000083 ORTHO05D003582 7.9e-21 103.6 55 92.7
Thhalv10019902m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 7.9e-21 103.6 55 92.7
Oeu033539.1 Olea europaea HOM05D000083 ORTHO05D003582 1.0e-20 103.2 55 90.9
Lalb_Chr10g0095061 Lupinus albus HOM05D000083 ORTHO05D003582 1.3e-20 102.8 54 92.6
HPP92_002094 Vanilla planifolia HOM05D000083 ORTHO05D003582 1.8e-20 102.4 54 94.4
Sp3g06890 Schrenkiella parvula HOM05D000083 ORTHO05D003582 3.9e-20 101.3 55 90.9
TWI74G1512 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 3.9e-20 101.3 55 89.1
Aa31LG8G730 Aethionema arabicum HOM05D000083 ORTHO05D003582 6.7e-20 100.5 55 89.1
CiPaw.04G139600 Carya illinoinensis HOM05D000083 ORTHO05D003582 6.7e-20 100.5 55 89.1
THA.LOC104810328 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 8.7e-20 100.1 55 87.3
AL3G19360 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 4.3e-19 97.8 55 89.1
Sabra05G0078000 Salix brachista HOM05D000083 ORTHO05D003582 4.3e-19 97.8 105 55.2
Pp3c15_25040 Physcomitrium patens HOM05D000083 ORTHO05D003582 9.7e-19 96.7 55 87.3
Pp3c9_25590 Physcomitrium patens HOM05D000083 ORTHO05D003582 9.7e-19 96.7 55 87.3
Mapoly0140s0044 Marchantia polymorpha HOM05D000083 ORTHO05D003582 1.6e-18 95.9 55 85.5
Pp3c15_11760 Physcomitrium patens HOM05D000083 ORTHO05D003582 3.7e-18 94.7 55 83.6
BcaB04g20987 Brassica carinata HOM05D000083 ORTHO05D003582 4.8e-18 94.4 56 83.9
A01p40080 Brassica napus HOM05D000083 ORTHO05D003582 4.8e-18 94.4 56 83.9
C01p51560 Brassica napus HOM05D000083 ORTHO05D003582 4.8e-18 94.4 56 83.9
BolC1t05099H Brassica oleracea HOM05D000083 ORTHO05D003582 4.8e-18 94.4 56 83.9
BraA01t04049Z Brassica rapa HOM05D000083 ORTHO05D003582 4.8e-18 94.4 56 83.9
SMO198G0032 Selaginella moellendorffii HOM05D000083 ORTHO05D003582 4.8e-18 94.4 55 83.6
CBR_g38927 Chara braunii HOM05D000083 ORTHO05D003582 2.4e-17 92.0 54 83.3
COL.COLO4_08995 Corchorus olitorius HOM05D000083 ORTHO05D003582 3.1e-17 91.7 45 100.0
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 3.1e-17 91.7 45 100.0
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 3.1e-17 91.7 45 100.0
Lj3C850G18 Lonicera japonica HOM05D000083 ORTHO05D003582 3.1e-17 91.7 45 100.0
VMungo1127G2131 Vigna mungo HOM05D000083 ORTHO05D003582 3.1e-17 91.7 45 100.0
SEGI_30249 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 4.1e-17 91.3 62 77.4
CBR_g66805 Chara braunii HOM05D000083 ORTHO05D003582 5.3e-17 90.9 54 79.6
Zm00001eb432730 Zea mays HOM05D000083 ORTHO05D003582 1.2e-16 89.7 45 97.8
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 4.5e-16 87.8 45 95.6
HanXRQChr06g0171991 Helianthus annuus HOM05D000083 ORTHO05D003582 6.5e-15 84.0 45 91.1
PRCOL_00002034 Prasinoderma coloniale HOM05D000083 ORTHO05D003582 3.2e-14 81.6 53 69.8
AagrBONN_evm.TU.Sc2ySwM_117.4127 Anthoceros agrestis HOM05D000083 ORTHO05D003582 2.1e-13 79.0 71 60.6
DCAR_026911 Daucus carota HOM05D000083 ORTHO05D003582 6.1e-13 77.4 66 60.6
Cre01.g016570 Chlamydomonas reinhardtii HOM05D000083 ORTHO05D003582 1.8e-09 65.9 53 50.9
AUR62015218 Chenopodium quinoa HOM05D000083 ORTHO05D003582 4.1e-09 64.7 30 100.0
MCO05G550 Micromonas commoda HOM05D000083 ORTHO05D003582 1.9e-06 55.8 50 52.0


User provided reference genes

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