Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.7e-187 659.4 399 100.0
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 6.5e-171 604.4 390 84.4
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.9e-167 592.8 390 82.1
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 6.5e-163 577.8 390 80.8
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 3.7e-150 535.4 386 74.4
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 7.2e-146 521.2 386 72.5
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 4.7e-145 518.5 387 72.9
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 3.0e-144 515.8 384 72.9
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 5.2e-144 515.0 386 72.5
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.6e-143 512.7 386 71.5
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 4.4e-143 511.9 388 73.2
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.3e-142 510.4 386 72.5
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 4.1e-141 505.4 386 71.8
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 5.3e-141 505.0 312 84.9
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 9.1e-141 504.2 384 72.4
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.6e-140 503.4 386 72.0
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 2.6e-140 502.7 309 85.8
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 3.5e-140 502.3 386 71.5
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 3.5e-140 502.3 313 83.1
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 7.7e-140 501.1 386 71.2
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.7e-139 500.0 387 70.3
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.7e-139 500.0 384 71.6
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 2.9e-139 499.2 312 84.3
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 2.9e-139 499.2 386 69.9
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 5.5e-138 495.0 365 72.6
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 5.5e-138 495.0 387 70.8
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 5.5e-138 495.0 386 71.0
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 2.1e-137 493.0 308 83.8
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 2.1e-137 493.0 382 78.0
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 3.6e-137 492.3 385 70.1
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 8.0e-137 491.1 386 70.7
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.4e-136 490.3 384 71.6
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 1.4e-136 490.3 386 69.4
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.8e-136 490.0 385 69.9
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 6.8e-136 488.0 368 72.6
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 8.8e-136 487.6 312 83.0
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 2.0e-135 486.5 313 82.1
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.6e-135 486.1 387 69.0
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.4e-135 485.7 314 81.8
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 4.4e-135 485.3 386 69.9
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 9.8e-135 484.2 313 81.8
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.3e-134 483.8 384 71.1
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.7e-134 483.4 388 69.8
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.7e-134 483.4 387 68.7
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 3.7e-134 482.3 312 81.4
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 8.3e-134 481.1 386 69.7
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 1.8e-133 479.9 382 70.2
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 5.4e-133 478.4 372 71.0
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 9.1e-133 477.6 365 69.9
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 2.0e-132 476.5 389 66.8
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 6.5e-131 471.5 381 66.9
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 5.5e-130 468.4 386 67.6
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 7.2e-130 468.0 389 66.1
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.6e-129 466.8 389 66.3
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 2.3e-128 463.0 313 78.3
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 6.8e-128 461.5 313 78.3
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 3.4e-127 459.1 312 77.6
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 9.8e-127 457.6 363 68.9
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.8e-126 456.1 384 65.9
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 8.3e-126 454.5 312 78.5
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.1e-125 454.1 310 76.8
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.0e-125 451.4 313 77.3
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 2.0e-124 449.9 312 76.9
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.0e-124 449.9 312 77.2
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 2.0e-124 449.9 384 67.4
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.7e-123 446.8 388 63.1
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.7e-123 446.8 388 63.1
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.3e-123 446.4 312 76.6
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 6.6e-123 444.9 357 66.9
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 8.6e-123 444.5 385 66.5
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 1.9e-122 443.4 314 73.9
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 2.5e-122 443.0 311 75.9
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 5.6e-122 441.8 312 76.3
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 9.5e-122 441.0 294 78.9
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.6e-121 440.3 311 75.6
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.1e-121 439.9 370 65.1
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 3.6e-121 439.1 304 77.3
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 8.0e-121 438.0 389 63.2
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.3e-120 436.4 312 74.4
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.3e-120 436.4 291 79.0
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 2.3e-120 436.4 386 63.2
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 2.3e-120 436.4 405 61.7
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 5.2e-120 435.3 312 75.0
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 1.2e-119 434.1 299 79.3
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.4e-119 432.2 312 72.8
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.7e-118 430.3 370 63.5
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 3.7e-118 429.1 308 75.0
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.4e-117 427.2 312 73.4
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.4e-117 426.4 369 63.1
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 2.4e-117 426.4 364 63.7
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 4.1e-117 425.6 312 72.1
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.4e-117 425.2 318 72.6
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.0e-116 423.3 351 67.2
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.0e-116 423.3 312 71.5
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 3.5e-116 422.5 309 73.5
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 7.8e-116 421.4 360 65.8
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.9e-115 419.1 312 73.1
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 6.6e-115 418.3 319 73.0
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.1e-114 417.5 311 72.0
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 1.1e-114 417.5 314 71.0
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.2e-113 414.1 313 70.3
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.6e-113 413.7 268 81.7
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 6.2e-113 411.8 302 72.5
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 1.0e-112 411.0 363 64.7
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 9.8e-111 404.4 291 75.9
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 9.8e-111 404.4 311 70.1
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.2e-110 403.3 314 69.7
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 4.9e-110 402.1 315 68.6
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 4.1e-109 399.1 385 60.5
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.2e-108 397.5 313 70.6
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 3.5e-108 396.0 311 69.5
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 7.8e-108 394.8 291 72.9
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 1.7e-107 393.7 291 72.5
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.7e-107 393.7 291 70.1
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 2.3e-107 393.3 312 67.9
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 8.6e-107 391.3 312 69.2
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 8.6e-107 391.3 312 69.2
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.1e-106 391.0 292 69.5
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.5e-106 389.8 298 68.8
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.2e-105 387.5 355 61.7
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.6e-105 386.0 300 66.0
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.2e-104 382.1 314 68.2
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.2e-103 380.9 267 78.3
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 8.3e-102 374.8 307 71.0
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 8.3e-102 374.8 305 63.9
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.4e-101 372.1 300 65.0
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.2e-100 370.9 292 69.2
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.1e-96 357.8 341 60.4
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 7.6e-95 351.7 237 80.2
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.4e-93 347.4 301 59.5
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.2e-92 344.4 287 63.8
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 4.3e-90 335.9 301 58.1
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-89 334.3 286 67.1
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.7e-89 332.4 388 51.0
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 5.3e-80 302.4 217 74.2
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 9.0e-80 301.6 182 86.8
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 7.6e-79 298.5 293 56.3
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 3.0e-75 286.6 221 70.1
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.8e-51 207.6 125 90.4
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 2.2e-46 190.7 121 77.7
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 3.3e-42 176.8 141 68.8
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.3e-26 123.6 139 50.4
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.3e-26 123.6 88 69.3
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 4.4e-26 123.2 70 81.4
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.7e-25 120.2 81 80.2
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 3.1e-24 117.1 111 56.8
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.1e-24 116.7 104 54.8
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.6e-20 104.8 67 74.6
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.7e-20 103.2 130 53.1
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.8e-19 101.3 67 68.7
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 4.0e-19 100.1 67 70.1
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.1e-16 92.0 63 69.8
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-15 88.6 93 53.8
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.1e-12 77.8 97 51.5
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 8.0e-12 75.9 48 66.7
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.0e-11 75.5 58 63.8
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 1.0e-11 75.5 42 88.1
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 1.1e-08 65.5 249 26.5
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 7.0e-08 62.8 75 46.7
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.2e-07 62.0 74 47.3
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 2.7e-07 60.8 164 27.4
MELO3C031365.2 Cucumis melo HOM05D004327 ORTHO05D005032 2.9e-06 57.4 68 50.0


User provided reference genes

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