Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 0.0e+00 1569.3 824 100.0
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 0.0e+00 1391.7 830 88.7
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 0.0e+00 1387.9 830 88.3
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 0.0e+00 1120.9 828 68.8
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 0.0e+00 1094.0 828 67.5
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 0.0e+00 1093.2 828 67.5
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 0.0e+00 1090.1 828 68.4
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 0.0e+00 1085.9 829 66.9
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 0.0e+00 1085.5 828 66.9
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 0.0e+00 1084.7 828 67.3
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 0.0e+00 1082.4 830 66.9
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 0.0e+00 1082.4 828 67.3
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 0.0e+00 1078.5 829 66.1
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1076.6 828 66.3
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1075.5 829 66.3
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 5.6e-312 1073.9 829 66.7
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 1.1e-311 1073.2 828 67.1
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 3.9e-311 1071.2 826 66.2
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 8.5e-311 1070.1 828 66.8
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 8.5e-311 1070.1 829 66.7
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 1.1e-310 1069.7 826 68.5
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.9e-310 1068.9 828 66.5
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 3.3e-310 1068.1 832 66.3
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 3.3e-310 1068.1 829 65.4
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 1.2e-309 1066.2 829 65.6
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 1.4e-308 1062.8 829 65.0
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 2.3e-308 1062.0 829 64.9
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 2.3e-308 1062.0 830 67.0
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 4.9e-306 1054.3 831 66.7
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 6.4e-306 1053.9 859 64.4
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 6.4e-306 1053.9 827 64.9
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.1e-305 1053.1 859 64.4
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 3.2e-305 1051.6 813 67.4
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 3.3e-302 1041.6 829 65.4
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 3.3e-302 1041.6 826 64.5
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 1.2e-301 1039.6 826 64.6
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 3.1e-300 1035.0 826 63.9
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 5.2e-300 1034.2 826 64.2
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 2.0e-299 1032.3 826 64.0
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 5.8e-299 1030.8 826 63.9
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 7.5e-299 1030.4 826 63.7
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 1.7e-298 1029.2 826 64.0
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 1.7e-298 1029.2 826 63.6
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 3.7e-298 1028.1 826 64.0
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 8.3e-298 1026.9 826 63.4
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 2.4e-297 1025.4 826 63.6
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 3.2e-297 1025.0 825 64.5
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 3.1e-292 1008.4 765 67.1
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 3.1e-292 1008.4 828 62.4
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 6.8e-292 1007.3 785 65.2
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 8.4e-290 1000.3 826 61.9
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 1.1e-289 1000.0 824 64.0
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 1.4e-289 999.6 828 60.7
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 3.5e-288 995.0 826 61.7
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 2.3e-287 992.3 768 65.6
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 7.3e-286 987.3 766 65.9
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 2.8e-285 985.3 826 61.9
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 1.8e-284 982.6 828 61.1
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 2.4e-284 982.2 843 61.2
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 3.1e-284 981.9 830 61.8
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 4.0e-284 981.5 793 63.6
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.0e-284 981.5 874 60.8
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 1.2e-283 979.9 824 62.0
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 6.4e-282 974.2 827 60.7
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 1.1e-281 973.4 825 62.2
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 2.7e-280 968.8 829 60.7
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 4.6e-280 968.0 824 60.9
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 6.0e-280 967.6 826 60.5
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 7.8e-280 967.2 826 61.4
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 2.3e-279 965.7 824 60.4
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 3.9e-279 964.9 814 61.7
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 8.7e-279 963.8 829 60.4
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 8.7e-279 963.8 830 61.2
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 2.6e-275 952.2 828 59.3
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 9.9e-275 950.3 833 61.0
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 1.2e-272 943.3 870 57.6
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 2.3e-271 939.1 950 54.7
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 9.6e-270 933.7 822 59.5
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 6.2e-269 931.0 825 58.8
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 1.1e-268 930.2 783 60.9
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 1.7e-258 896.3 828 58.6
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 1.4e-257 893.3 780 60.3
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 5.7e-254 881.3 716 63.7
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 4.8e-253 878.2 831 56.1
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 1.2e-235 820.5 821 51.9
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 7.7e-235 817.8 630 66.5
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 2.9e-234 815.8 822 51.8
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 8.8e-231 804.3 678 61.8
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.9e-218 762.7 443 89.4
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 1.4e-215 753.8 834 48.7
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 2.0e-214 750.0 833 48.7
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 1.2e-198 697.6 772 48.3
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 1.5e-190 670.6 464 73.7
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 4.9e-189 665.6 820 45.4
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 3.2e-180 636.3 529 61.6
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 2.9e-173 613.2 835 42.3
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 9.9e-166 588.2 862 41.1
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 3.3e-161 573.2 448 66.1
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 2.8e-160 570.1 834 41.5
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 2.1e-155 553.9 441 62.8
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 6.7e-154 548.9 817 40.9
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 6.7e-154 548.9 817 40.9
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 4.5e-142 509.6 480 57.3
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.0e-138 496.9 515 54.2
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.2e-131 474.9 365 73.2
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 3.6e-123 446.8 376 62.8
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 7.4e-121 439.1 402 57.2
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 2.5e-116 424.1 457 48.8
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 2.7e-115 420.6 826 34.1
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 6.1e-115 419.5 333 64.0
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 8.8e-114 415.6 360 59.2
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 6.1e-107 392.9 314 64.0
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 4.5e-102 376.7 264 73.5
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 8.5e-101 372.5 263 74.1
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.4e-89 334.0 284 62.0
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.5e-84 317.8 303 56.8
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 1.2e-81 308.9 255 64.7
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.4e-79 302.0 325 49.2
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 5.4e-71 273.5 439 40.8
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 4.6e-70 270.4 250 57.2
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 2.1e-67 261.5 200 68.0
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 3.2e-63 247.7 238 53.4
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 1.0e-61 242.7 224 58.9
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 7.8e-54 216.5 256 47.3
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 9.6e-52 209.5 163 63.8
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 1.2e-49 202.6 178 57.9
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.2e-49 202.6 175 62.9
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 3.6e-43 181.0 195 52.3
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 8.1e-43 179.9 208 48.6
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 7.6e-41 173.3 109 74.3
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.1e-39 169.5 498 30.9
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 1.1e-36 159.5 1019 23.7
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 1.7e-32 145.6 673 25.0
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 4.9e-32 144.1 174 47.7
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 1.8e-21 109.0 83 65.1
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 3.3e-20 104.8 82 56.1
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 1.3e-19 102.8 79 64.6
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 2.8e-19 101.7 91 56.0
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 1.3e-16 92.8 483 24.0
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.8e-13 82.4 386 24.9
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 3.9e-13 81.3 358 24.3
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 5.1e-13 80.9 569 23.0
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 8.8e-13 80.1 76 56.6
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 6.3e-11 73.9 564 20.0
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 6.3e-11 73.9 564 20.0
AUR62020999 Chenopodium quinoa HOM05D003429 ORTHO05D003873 3.1e-10 71.6 354 23.2
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 3.1e-10 71.6 488 23.2
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 4.5e-09 67.8 95 41.1
MCO13G155 Micromonas commoda HOM05D003429 ORTHO05D003873 1.0e-08 66.6 367 24.3
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 1.3e-08 66.2 42 71.4
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 2.9e-08 65.1 363 22.9
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 8.5e-08 63.5 357 23.5
Lsat_1_v5_gn_2_33241 Lactuca sativa HOM05D000329 ORTHO05D005330 3.2e-07 61.6 127 32.3
SHI23206 Sapria himalayana HOM05D000329 ORTHO05D005330 3.2e-07 61.6 78 42.3
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 2.7e-06 58.5 353 20.4
Lsat_1_v5_gn_8_51680 Lactuca sativa HOM05D000144 ORTHO05D005330 3.6e-06 58.2 49 57.1
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 4.7e-06 57.8 279 25.1


User provided reference genes

Program Settings