Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.9e-232 808.9 442 100.0
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.1e-152 543.9 470 68.9
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 4.0e-145 518.8 458 67.0
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.5e-144 516.9 538 61.3
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 4.5e-141 505.4 459 65.1
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 3.6e-114 416.0 464 54.5
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 2.3e-108 396.7 483 56.3
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 8.1e-106 388.3 464 55.2
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.4e-104 382.5 466 54.9
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 4.4e-104 382.5 459 54.5
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 7.6e-104 381.7 470 55.3
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 7.6e-104 381.7 471 52.7
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.3e-103 380.9 474 56.1
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.7e-103 380.6 464 53.7
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.3e-100 370.9 464 54.1
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 1.7e-100 370.5 476 52.5
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 5.1e-100 369.0 481 52.0
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 3.3e-99 366.3 477 53.7
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.3e-99 365.2 453 51.4
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 4.7e-98 362.5 453 51.2
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.8e-96 355.5 462 52.6
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.2e-95 353.6 476 51.7
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.1e-94 348.6 454 49.8
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.6e-93 347.4 469 50.5
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.8e-93 345.1 457 50.5
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 5.6e-91 339.0 456 52.4
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 6.2e-90 335.5 478 49.8
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 2.4e-89 333.6 466 49.6
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.2e-88 331.3 377 51.7
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 1.2e-85 321.2 441 48.5
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 7.9e-85 318.5 456 46.3
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.0e-84 318.2 455 45.9
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.7e-84 317.4 441 48.3
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 5.1e-84 315.8 486 45.7
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 6.6e-84 315.5 630 41.4
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.5e-83 314.3 478 47.5
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.9e-83 313.9 465 46.2
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 5.6e-83 312.4 467 47.5
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 5.6e-83 312.4 497 44.3
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.3e-82 311.2 448 46.0
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.1e-82 310.5 456 44.7
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 3.6e-82 309.7 516 44.8
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.2e-82 308.9 465 45.2
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 8.1e-82 308.5 458 47.2
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 8.1e-82 308.5 458 47.2
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 8.1e-82 308.5 456 48.9
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 1.8e-81 307.4 458 49.3
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-81 307.0 456 45.0
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 3.1e-81 306.6 464 49.4
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.2e-80 304.7 305 55.7
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 3.4e-80 303.1 444 45.0
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 4.5e-80 302.8 444 45.0
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 5.8e-80 302.4 438 45.2
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 5.8e-80 302.4 454 45.4
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 3.8e-79 299.7 445 44.0
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 6.4e-79 298.9 448 43.8
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.1e-78 298.1 470 43.2
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-78 297.7 448 44.0
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.4e-78 297.0 478 45.2
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.4e-78 295.8 452 44.9
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 7.1e-78 295.4 395 48.6
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 9.3e-78 295.0 457 49.5
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 1.6e-77 294.3 419 46.8
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.6e-77 294.3 454 44.3
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.6e-77 294.3 444 43.7
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.3e-76 290.4 467 48.8
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.3e-76 290.4 468 48.5
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.0e-76 290.0 353 50.4
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 8.7e-76 288.5 464 44.2
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 1.9e-75 287.3 436 44.7
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 2.5e-75 287.0 465 47.5
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.5e-75 287.0 420 45.2
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.3e-75 286.2 467 48.6
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 4.3e-75 286.2 375 47.2
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 5.6e-75 285.8 455 44.8
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-74 284.6 467 48.4
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 8.1e-74 282.0 380 49.5
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 8.1e-74 282.0 448 43.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.4e-73 281.2 472 43.2
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.8e-73 280.8 378 47.1
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.8e-73 280.8 387 47.0
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 2.4e-73 280.4 367 50.4
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 5.3e-73 279.3 384 45.8
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 6.9e-73 278.9 377 46.4
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 6.9e-73 278.9 380 47.4
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 9.0e-73 278.5 380 47.4
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.2e-72 278.1 483 42.2
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-72 278.1 455 46.6
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.2e-72 278.1 417 45.6
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.0e-72 277.3 469 44.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.6e-72 276.9 403 46.2
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.5e-72 276.2 455 43.1
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 5.8e-72 275.8 446 47.1
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 7.6e-72 275.4 463 42.1
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 2.9e-71 273.5 451 43.0
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 4.9e-71 272.7 438 42.7
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 4.9e-71 272.7 362 47.5
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.5e-71 272.3 464 42.0
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 8.4e-71 271.9 371 46.1
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 2.5e-70 270.4 451 42.6
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.5e-70 270.4 487 40.9
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 6.0e-69 265.8 472 42.6
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.0e-68 265.0 447 42.5
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-68 264.6 447 42.3
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 3.0e-68 263.5 430 42.6
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 3.9e-68 263.1 441 43.1
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 6.7e-68 262.3 371 45.3
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 8.7e-68 261.9 473 44.8
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 1.9e-67 260.8 429 42.4
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.5e-67 260.4 435 42.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.2e-66 255.4 451 47.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 5.3e-65 252.7 354 45.8
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.3e-63 248.1 323 48.6
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 3.8e-63 246.5 234 57.7
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 6.5e-63 245.7 454 42.7
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 7.1e-62 242.3 458 42.4
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 9.3e-62 241.9 341 46.3
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.6e-61 241.1 403 43.7
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 3.0e-60 236.9 366 44.8
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 2.2e-58 230.7 414 44.4
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.3e-58 229.2 380 40.5
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 9.0e-57 225.3 429 40.1
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 9.0e-57 225.3 477 38.2
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 9.0e-57 225.3 477 38.2
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 2.6e-56 223.8 481 37.8
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 7.7e-56 222.2 133 82.0
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.9e-55 220.3 310 47.1
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 8.5e-55 218.8 206 58.3
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-51 208.4 243 53.9
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.0e-51 207.6 410 41.0
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.1e-49 200.3 113 85.8
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 8.8e-44 182.2 102 86.3
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.3e-43 180.3 117 75.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.3e-43 180.3 117 75.2
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 2.2e-39 167.5 116 77.6
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.8e-36 157.9 95 78.9
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 9.7e-35 152.1 325 37.2
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 2.8e-34 150.6 319 43.6
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.0e-31 142.1 307 43.6
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.8e-31 140.2 78 87.2
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.9e-30 137.9 285 34.0
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 4.2e-30 136.7 131 54.2
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 6.1e-29 132.9 400 34.8
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.2e-24 118.6 113 54.0
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 5.0e-23 113.2 64 81.2
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 5.0e-23 113.2 290 36.2
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.1e-21 106.3 260 35.8
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 1.2e-19 102.1 66 74.2
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.6e-16 91.7 106 48.1
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 3.5e-16 90.5 105 45.7
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.7e-15 88.2 81 54.3
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.9e-15 87.4 61 67.2
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-14 85.5 55 78.2
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.0e-12 77.4 92 47.8
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.7e-10 71.6 35 91.4
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 6.4e-10 69.7 54 63.0
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.8e-09 68.2 297 36.4
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.0e-07 62.4 104 36.5
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 5.0e-07 60.1 77 44.2
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 8.6e-07 59.3 35 68.6
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.1e-06 58.9 105 34.3
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 7.3e-06 56.2 44 59.1
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 7.3e-06 56.2 44 59.1
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 7.3e-06 56.2 44 59.1
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 7.3e-06 56.2 77 42.9


User provided reference genes

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