Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.0e-169 599.0 293 100.0
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 5.8e-145 517.7 293 85.7
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 2.1e-142 509.2 294 85.7
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 3.3e-140 501.9 294 85.0
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 2.1e-126 456.1 314 75.8
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 5.9e-97 358.2 297 62.3
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.9e-95 353.2 294 61.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.9e-95 353.2 303 62.0
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.3e-95 352.4 287 62.7
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 7.2e-95 351.3 287 62.4
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 4.7e-94 348.6 294 61.2
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 6.1e-94 348.2 287 62.4
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 8.0e-94 347.8 296 61.1
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 8.0e-94 347.8 295 61.7
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.8e-93 346.7 299 58.2
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.9e-93 344.4 296 59.5
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 3.7e-91 339.0 287 61.3
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.3e-91 337.8 297 58.6
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 8.3e-91 337.8 302 58.3
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.4e-90 337.0 311 57.9
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 1.4e-90 337.0 291 59.8
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.2e-89 334.0 295 58.3
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.0e-88 330.9 290 60.0
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.0e-88 330.9 288 59.7
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 6.6e-88 328.2 285 59.3
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 6.6e-88 328.2 295 59.7
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 8.6e-88 327.8 289 59.5
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 4.3e-87 325.5 294 55.8
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.2e-86 323.9 286 58.0
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.2e-86 323.9 289 59.2
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.6e-86 323.6 291 58.4
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.6e-86 323.6 286 57.7
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 2.1e-86 323.2 287 58.9
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 4.7e-86 322.0 289 58.8
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 8.0e-86 321.2 297 56.9
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.0e-85 320.9 284 58.5
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.0e-85 320.9 293 57.7
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.8e-85 320.1 289 58.1
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 2.3e-85 319.7 284 55.3
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-84 317.4 286 56.6
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.2e-84 317.4 305 55.7
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.0e-84 316.6 313 56.2
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 2.6e-84 316.2 293 57.3
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.6e-84 316.2 294 56.5
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 3.4e-84 315.8 284 56.7
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 3.4e-84 315.8 298 57.0
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 5.8e-84 315.1 286 55.6
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.8e-84 314.3 292 56.2
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 2.9e-83 312.8 280 58.6
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 4.9e-83 312.0 326 52.5
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 8.3e-83 311.2 277 59.9
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.1e-82 310.8 295 54.9
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 1.1e-82 310.8 291 55.3
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.1e-82 310.8 295 55.3
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.1e-82 310.8 293 56.7
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.9e-82 310.1 299 54.5
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.9e-82 310.1 294 55.8
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.4e-82 309.7 280 58.6
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 9.2e-82 307.8 294 54.1
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.6e-81 307.0 286 55.6
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 3.5e-81 305.8 289 55.0
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 4.6e-81 305.4 301 53.8
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 2.3e-80 303.1 304 53.3
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 6.6e-80 301.6 291 54.3
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.5e-79 300.4 291 54.3
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.5e-79 300.4 295 54.2
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.9e-79 300.1 287 54.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 5.6e-79 298.5 308 52.3
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.8e-77 293.5 294 53.7
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 6.8e-77 291.6 291 53.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 8.9e-77 291.2 264 58.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 8.9e-77 291.2 217 65.0
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.2e-75 286.6 293 52.6
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 2.9e-75 286.2 291 51.9
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.9e-74 283.5 278 55.4
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 3.2e-74 282.7 271 57.6
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 9.2e-74 281.2 272 58.1
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.1e-73 280.0 276 55.4
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 3.5e-73 279.3 288 54.5
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 4.6e-73 278.9 290 53.1
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.0e-72 277.7 289 50.9
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 8.6e-72 274.6 291 51.9
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 8.6e-72 274.6 282 53.5
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 3.1e-69 266.2 298 48.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.9e-63 246.9 244 54.5
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.9e-63 246.9 289 47.8
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 2.5e-63 246.5 174 68.4
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 2.8e-62 243.0 344 40.7
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 2.4e-61 240.0 284 48.2
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 7.6e-60 235.0 178 64.0
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.3e-59 234.2 292 45.2
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 7.1e-58 228.4 292 47.3
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 9.2e-58 228.0 175 62.9
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.4e-53 214.2 276 44.9
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 3.1e-53 213.0 297 44.4
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.0e-52 210.3 277 47.7
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.3e-51 207.6 287 41.8
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.2e-50 202.6 122 78.7
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 5.4e-50 202.2 150 66.7
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 5.4e-50 202.2 121 76.9
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.1e-50 201.8 289 41.2
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.1e-49 200.3 183 55.2
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.8e-45 187.2 287 39.4
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.0e-44 183.7 279 40.9
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.3e-43 181.0 272 42.3
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.7e-43 180.6 287 39.4
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.2e-43 180.3 287 39.7
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 8.4e-43 178.3 299 39.1
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.1e-42 177.9 289 38.4
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 5.4e-42 175.6 98 83.7
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.6e-41 174.1 285 38.6
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.6e-41 174.1 98 83.7
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.3e-40 170.2 268 42.2
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 3.3e-39 166.4 289 39.4
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 3.7e-38 162.9 321 38.0
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 2.0e-36 157.1 96 77.1
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 3.4e-36 156.4 296 37.8
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.4e-36 156.4 215 44.2
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 5.5e-34 149.1 203 43.3
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.6e-33 147.5 111 61.3
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 6.0e-33 145.6 154 50.6
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.0e-32 143.3 178 46.1
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.3e-31 139.8 188 42.0
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.6e-28 130.2 209 39.2
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 7.6e-28 128.6 150 46.7
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.1e-25 120.6 114 55.3
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.0e-24 116.7 100 58.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.5e-20 104.4 138 41.3
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.6e-20 103.6 138 41.3
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.1e-17 94.0 50 86.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 7.9e-17 92.0 54 77.8
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 9.7e-15 85.1 204 32.8
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 1.0e-11 75.1 50 68.0
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 7.9e-09 65.5 98 39.8
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.3e-08 63.9 105 34.3
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.0e-08 63.5 71 45.1
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 9.7e-07 58.5 64 48.4


User provided reference genes

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