Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.1e-208 728.8 374 100.0
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.5e-185 652.9 374 88.5
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 4.1e-167 591.7 373 82.6
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 4.4e-145 518.5 295 88.1
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 4.0e-138 495.4 287 86.4
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.5e-132 476.1 371 64.7
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 6.8e-130 468.0 372 64.2
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.0e-129 466.5 366 63.1
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.4e-129 465.7 374 63.4
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.5e-129 464.5 374 63.1
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.8e-129 464.2 374 63.1
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.7e-128 463.4 374 62.0
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.7e-128 463.4 369 62.6
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 8.3e-128 461.1 374 62.3
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-127 459.5 366 62.6
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 9.2e-127 457.6 382 60.5
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.6e-126 456.8 366 63.1
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.5e-126 455.7 365 62.2
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 3.5e-126 455.7 375 61.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 2.3e-125 453.0 368 61.1
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 2.3e-125 453.0 366 61.5
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 5.0e-125 451.8 374 61.5
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.1e-124 450.7 374 61.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.6e-123 446.8 374 61.0
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.6e-123 446.8 371 62.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.4e-122 443.7 375 59.7
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.2e-121 440.7 370 61.6
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.8e-121 438.3 370 61.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 9.8e-121 437.6 370 58.1
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.3e-120 437.2 371 60.9
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 6.4e-120 434.9 376 60.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.9e-119 433.3 372 59.1
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.0e-117 427.6 373 59.2
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.7e-117 426.8 374 58.3
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 5.0e-117 425.2 372 60.5
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 8.6e-117 424.5 376 59.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 5.6e-116 421.8 367 58.6
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 5.6e-116 421.8 367 58.6
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 7.3e-116 421.4 374 57.0
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.2e-115 420.6 367 58.3
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.1e-115 419.9 376 60.1
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 4.7e-115 418.7 374 57.5
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.2e-115 418.3 368 58.2
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 8.0e-115 417.9 372 59.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.4e-114 417.2 370 57.0
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.0e-113 413.3 369 56.9
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.6e-113 412.9 370 56.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 7.5e-113 411.4 366 56.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 7.5e-113 411.4 370 56.2
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.7e-112 409.1 375 56.5
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 3.7e-112 409.1 375 56.3
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 4.9e-112 408.7 369 55.3
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.4e-111 407.1 373 56.8
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 5.4e-111 405.2 372 57.3
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 7.0e-111 404.8 375 56.0
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 7.0e-111 404.8 376 56.4
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 9.2e-111 404.4 372 56.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.2e-110 404.1 325 63.1
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.6e-110 403.7 369 55.6
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.6e-110 403.7 366 54.4
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.1e-110 403.3 376 56.6
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.1e-110 403.3 384 54.9
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.7e-110 402.9 369 55.8
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 3.5e-110 402.5 372 55.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.6e-110 402.1 375 56.8
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 4.6e-110 402.1 371 55.8
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 7.8e-110 401.4 370 55.4
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.3e-109 400.6 368 56.2
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.3e-109 400.6 376 56.4
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.7e-109 400.2 316 62.7
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 2.3e-109 399.8 372 56.5
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.0e-109 399.4 372 55.4
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 5.1e-109 398.7 369 55.8
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 6.6e-109 398.3 377 53.1
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 6.6e-109 398.3 374 55.1
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 8.6e-109 397.9 369 55.3
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.1e-108 397.5 318 63.8
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.5e-108 396.4 378 54.2
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 2.1e-107 393.3 368 54.6
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.7e-107 392.1 369 55.6
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.1e-106 391.0 368 55.2
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.8e-106 390.2 370 54.6
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.3e-106 389.8 383 53.5
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 3.1e-106 389.4 370 55.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 8.9e-106 387.9 408 51.5
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.9e-106 387.9 389 53.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.2e-105 387.5 370 53.8
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.5e-105 387.1 368 53.5
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.0e-105 386.7 370 54.3
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.6e-105 386.3 369 54.5
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.6e-105 386.3 375 54.1
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.4e-105 386.0 365 56.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 4.4e-105 385.6 335 57.0
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 5.8e-105 385.2 370 54.1
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 9.9e-105 384.4 368 53.5
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 3.7e-104 382.5 371 53.9
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.9e-104 382.1 368 54.3
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.2e-102 377.5 394 51.5
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.1e-102 376.7 368 54.1
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.7e-102 376.3 486 45.9
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 3.9e-101 372.5 371 52.6
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 5.1e-101 372.1 372 52.2
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.5e-100 370.5 372 51.9
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.9e-100 370.2 355 53.8
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 7.3e-100 368.2 368 51.4
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 9.5e-100 367.9 403 49.9
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.6e-99 367.1 365 53.7
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 3.6e-99 365.9 407 49.1
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 3.6e-99 365.9 508 43.7
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 8.1e-99 364.8 372 51.3
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-98 363.6 382 50.8
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 4.0e-98 362.5 353 53.8
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.6e-97 359.8 406 48.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.3e-96 357.5 355 53.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 4.9e-96 355.5 356 53.4
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.9e-95 353.6 356 53.4
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.9e-95 353.6 374 51.9
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.1e-95 351.7 317 56.2
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.1e-94 350.1 366 50.8
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 6.0e-94 348.6 314 58.3
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.8e-94 348.2 371 49.3
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 5.1e-93 345.5 373 49.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.6e-91 340.5 372 47.3
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 3.8e-88 329.3 355 52.1
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 4.9e-88 328.9 316 54.7
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.0e-85 321.2 372 46.2
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 4.5e-81 305.8 310 52.3
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 5.8e-81 305.4 570 36.7
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.4e-79 300.8 314 52.9
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 4.2e-79 299.3 482 38.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 3.0e-77 293.1 302 53.0
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 4.9e-72 275.8 207 64.3
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.2e-71 272.7 209 65.1
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 8.2e-67 258.5 227 56.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 8.2e-67 258.5 206 61.2
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.1e-66 258.1 317 42.9
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.1e-66 256.5 208 63.5
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 5.3e-66 255.8 381 37.3
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.2e-62 244.6 380 38.7
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.7e-62 243.4 169 70.4
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-61 241.1 169 69.8
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.8e-61 240.7 374 39.3
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.3e-61 240.4 169 69.8
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.0e-61 240.0 164 70.7
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.0e-61 240.0 342 41.5
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.9e-61 239.6 172 69.2
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-60 237.7 207 58.5
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.5e-60 236.9 207 58.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.3e-59 234.6 310 43.5
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-58 229.2 162 68.5
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.5e-57 227.6 380 36.1
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.0e-57 227.3 379 36.9
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 6.5e-56 222.2 165 63.6
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.1e-55 221.5 378 36.0
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.9e-55 220.7 169 65.7
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 4.6e-54 216.1 204 54.4
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 1.4e-50 204.5 267 46.4
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.9e-49 199.1 153 62.7
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.7e-49 198.7 207 52.2
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.7e-43 181.0 205 46.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 6.3e-43 179.1 256 41.8
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.1e-42 178.3 379 32.2
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.6e-41 173.7 163 55.2
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.5e-40 169.1 110 74.5
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.5e-40 169.1 130 64.6
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 3.2e-39 166.8 223 42.6
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.5e-39 166.0 163 51.5
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.3e-36 156.8 153 54.9
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 3.1e-34 150.2 123 56.9
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.7e-32 144.4 139 53.2
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 5.5e-31 139.4 173 45.7
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.4e-29 134.8 140 50.7
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.4e-29 134.8 137 51.8
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.4e-28 130.2 124 52.4
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.0e-20 104.4 274 26.6
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.2e-19 100.9 308 28.6
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 3.9e-08 63.5 380 22.4


User provided reference genes

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