Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 3.2e-90 335.1 172 100.0
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.9e-82 309.3 172 90.1
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-77 293.5 201 77.6
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.1e-77 292.0 201 77.1
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.1e-77 292.0 201 77.1
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 8.9e-77 290.4 172 84.3
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 4.4e-76 288.1 172 84.3
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.4e-74 283.1 172 82.6
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.9e-74 282.7 174 82.8
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.4e-74 281.2 174 81.6
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.2e-73 280.0 174 82.2
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.7e-73 278.9 173 83.2
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.5e-73 278.5 170 81.2
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 3.0e-72 275.4 175 80.0
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 3.9e-72 275.0 174 82.8
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 5.1e-72 274.6 173 80.9
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.5e-71 273.1 173 80.3
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.5e-71 273.1 173 80.3
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.5e-71 273.1 173 80.3
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.3e-71 271.6 175 80.0
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 9.5e-71 270.4 175 79.4
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 9.5e-71 270.4 165 81.8
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.2e-70 270.0 172 76.7
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.8e-70 268.9 174 78.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.6e-70 268.5 173 78.0
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.7e-70 268.1 172 77.9
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 4.7e-70 268.1 170 80.0
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 6.2e-70 267.7 172 77.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 6.2e-70 267.7 172 78.5
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 6.2e-70 267.7 169 80.5
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 6.2e-70 267.7 173 79.8
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.1e-69 266.9 172 77.9
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.1e-69 266.9 172 79.7
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.1e-69 266.9 173 78.6
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.1e-69 266.9 189 77.8
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.4e-69 266.5 173 76.9
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.4e-69 266.5 175 78.3
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.3e-69 265.8 178 77.5
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.3e-69 265.8 175 76.0
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 2.3e-69 265.8 178 77.5
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.1e-69 265.4 160 82.5
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.1e-69 265.4 174 77.6
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.1e-69 265.4 173 77.5
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 5.2e-69 264.6 181 76.2
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 5.2e-69 264.6 162 79.6
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.8e-69 264.2 162 79.0
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 6.8e-69 264.2 183 73.8
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 6.8e-69 264.2 170 78.8
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 6.8e-69 264.2 173 76.9
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 8.9e-69 263.8 171 78.4
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.5e-68 263.1 162 79.0
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.5e-68 263.1 181 74.6
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.0e-68 262.7 170 80.0
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 2.6e-68 262.3 169 77.5
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 3.4e-68 261.9 172 77.9
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.4e-68 261.9 173 76.9
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.4e-68 261.5 162 79.0
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 5.8e-68 261.2 173 76.9
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 7.6e-68 260.8 196 72.4
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 9.9e-68 260.4 172 75.6
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.7e-67 259.6 175 77.7
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.8e-67 258.5 162 77.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 4.9e-67 258.1 175 77.1
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 6.4e-67 257.7 174 75.9
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-66 256.1 172 74.4
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.9e-66 256.1 172 74.4
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-66 256.1 210 67.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.9e-66 256.1 173 75.7
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 74.4
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 75.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 74.4
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 3.2e-66 255.4 172 73.8
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 3.2e-66 255.4 172 73.8
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 3.2e-66 255.4 172 74.4
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.2e-66 255.4 172 73.8
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.1e-66 255.0 172 74.4
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 74.4
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 74.4
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 73.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 74.4
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 75.0
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 74.4
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 73.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 9.2e-66 253.8 170 74.1
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 9.2e-66 253.8 169 77.5
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.2e-65 253.4 172 72.7
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.6e-65 253.1 172 72.7
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.1e-65 252.7 174 75.3
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.1e-65 252.7 162 77.8
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.7e-65 252.3 174 74.7
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.5e-65 251.9 172 72.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 4.6e-65 251.5 174 74.7
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 4.6e-65 251.5 158 79.7
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.0e-64 250.4 173 70.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 3.0e-64 248.8 173 75.7
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 3.9e-64 248.4 173 69.9
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 5.1e-64 248.1 168 76.2
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 6.6e-64 247.7 173 72.8
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 8.6e-64 247.3 164 75.0
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 8.6e-64 247.3 176 74.4
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 8.6e-64 247.3 173 73.4
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.1e-63 246.9 169 72.8
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.5e-63 246.5 164 75.0
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.5e-63 246.5 164 75.0
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.3e-63 245.0 139 88.5
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.6e-62 243.0 208 62.5
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 2.0e-60 236.1 167 70.1
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.6e-60 235.7 170 70.0
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.8e-59 231.9 219 59.8
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 6.6e-56 221.1 229 54.6
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 8.7e-56 220.7 172 64.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.5e-55 219.9 172 72.1
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.9e-55 219.5 143 76.2
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 4.8e-54 214.9 263 49.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 2.4e-53 212.6 186 64.0
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.0e-52 209.5 174 66.1
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.9e-52 207.2 120 82.5
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 2.3e-48 196.1 113 82.3
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.4e-45 186.8 169 59.2
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.1e-37 160.6 135 60.0
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 4.0e-37 158.7 108 75.9
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 4.0e-37 158.7 116 66.4
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.3e-37 158.3 108 74.1
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 3.4e-36 155.6 139 52.5
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.1e-34 150.6 119 67.2
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 7.1e-34 147.9 97 76.3
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.7e-33 146.0 135 49.6
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.7e-33 146.0 109 68.8
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.1e-31 140.6 117 65.8
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 4.8e-30 135.2 109 62.4
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 1.4e-29 133.7 103 68.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.0e-27 127.5 100 67.0
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.2e-26 122.1 105 62.9
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 5.5e-26 121.7 74 78.4
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 5.5e-26 121.7 74 78.4
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.9e-24 115.5 105 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.5e-23 113.6 112 43.8
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 3.3e-23 112.5 63 87.3
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 8.2e-22 107.8 104 45.2
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.1e-21 105.9 64 81.2
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 5.3e-21 105.1 61 83.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 9.1e-21 104.4 83 69.9
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.5e-20 103.6 106 39.6
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 7.7e-20 101.3 65 73.8
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 4.2e-18 95.5 63 71.4
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 6.1e-17 91.7 106 41.5
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 3.0e-16 89.4 94 46.8
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.7e-14 83.6 136 36.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 3.7e-14 82.4 47 80.9
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.8e-14 82.0 104 49.0
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.2e-06 56.6 32 84.4
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 4.8e-06 55.5 28 92.9


User provided reference genes

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