Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 2.9e-252 874.8 447 100.0
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 4.5e-221 771.2 450 87.1
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.1e-219 766.5 449 86.9
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 9.7e-216 753.4 449 85.7
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 9.8e-168 594.0 453 69.5
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.1e-166 590.5 470 67.9
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.4e-166 590.1 445 70.1
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.6e-165 586.6 442 69.9
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.0e-165 586.3 446 68.8
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 3.5e-165 585.5 446 69.7
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 7.8e-165 584.3 447 68.9
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.0e-164 583.9 437 70.7
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 2.9e-164 582.4 448 68.1
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.9e-164 582.4 444 68.0
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 1.5e-163 580.1 452 67.3
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 5.6e-163 578.2 449 67.9
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 7.3e-163 577.8 452 67.0
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.5e-163 577.4 448 67.2
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 8.0e-162 574.3 461 65.9
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.0e-161 573.9 485 64.1
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.4e-161 573.5 451 67.2
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.8e-161 573.2 446 66.8
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 4.0e-161 572.0 438 68.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 8.9e-161 570.9 452 66.6
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.2e-160 570.5 463 66.3
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 2.6e-160 569.3 449 67.7
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.3e-159 567.0 440 66.1
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 8.3e-159 564.3 448 66.7
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.1e-158 563.9 444 67.3
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.1e-158 563.9 445 66.1
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 1.9e-158 563.1 446 66.6
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 2.4e-158 562.8 434 68.9
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 2.7e-157 559.3 434 68.2
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 3.5e-157 558.9 433 67.2
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.9e-155 553.1 444 66.2
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 2.5e-155 552.7 430 66.7
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 2.5e-155 552.7 432 68.1
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.3e-155 552.4 494 59.7
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 3.3e-155 552.4 450 65.6
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 4.3e-155 552.0 459 65.1
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 7.3e-155 551.2 448 66.7
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 4.7e-154 548.5 462 63.9
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.7e-154 548.5 447 64.4
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 6.2e-154 548.1 440 65.2
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 6.2e-154 548.1 433 65.6
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 8.0e-154 547.7 490 61.0
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.1e-153 547.4 440 64.8
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.4e-153 547.0 450 64.9
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.4e-153 547.0 433 65.4
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 6.8e-153 544.7 438 66.2
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.2e-152 543.9 429 66.0
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 2.0e-152 543.1 456 64.5
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.7e-151 540.0 446 64.6
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 1.7e-151 540.0 456 64.0
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 3.7e-151 538.9 440 63.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 8.3e-151 537.7 512 59.0
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 3.2e-150 535.8 440 64.3
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 5.4e-150 535.0 457 63.7
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.7e-149 532.7 440 63.4
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 3.5e-149 532.3 464 63.6
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 4.6e-149 531.9 452 64.6
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.3e-148 529.6 428 63.3
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.5e-147 526.9 441 61.9
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 4.3e-147 525.4 428 62.9
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 9.5e-147 524.2 441 62.1
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.2e-146 523.9 437 62.7
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.1e-145 520.8 440 61.6
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.8e-145 520.0 438 62.8
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 4.0e-145 518.8 455 61.5
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 8.9e-145 517.7 450 60.7
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 1.2e-144 517.3 441 62.6
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.2e-144 517.3 462 59.3
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 2.0e-144 516.5 429 62.5
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 2.0e-144 516.5 467 58.7
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.9e-143 512.7 428 63.3
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 6.4e-143 511.5 430 60.5
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 2.4e-142 509.6 441 61.5
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.2e-141 507.3 444 62.2
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 1.2e-141 507.3 428 61.9
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 2.1e-141 506.5 426 62.9
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 2.1e-141 506.5 440 61.4
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 2.1e-141 506.5 440 61.4
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 2.7e-141 506.1 428 61.4
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.0e-140 504.2 428 61.2
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.0e-140 504.2 445 60.7
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.0e-140 504.2 449 60.6
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.7e-140 503.4 419 63.7
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 6.6e-140 501.5 417 64.5
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 9.5e-139 497.7 428 60.7
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.6e-138 496.9 462 59.5
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.6e-138 496.9 432 62.3
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 8.1e-138 494.6 426 60.8
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.5e-136 490.3 440 61.6
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 4.2e-134 482.3 378 68.0
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 5.4e-134 481.9 508 53.0
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 2.1e-133 479.9 439 60.8
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 6.0e-133 478.4 470 57.7
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 7.8e-133 478.0 414 63.0
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.2e-130 470.7 436 57.6
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 6.2e-130 468.4 458 57.6
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.4e-129 466.5 463 55.9
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 9.9e-128 461.1 437 59.5
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.7e-127 460.3 485 53.8
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.1e-126 457.6 436 57.3
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 4.6e-125 452.2 344 68.6
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.1e-114 416.8 369 59.1
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 9.3e-110 401.4 458 50.0
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.8e-106 389.8 298 68.5
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.4e-105 387.5 450 51.1
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 2.1e-101 373.6 521 41.8
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 2.2e-98 363.6 483 44.1
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.1e-97 361.3 361 57.1
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 6.5e-95 352.1 470 45.5
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 5.5e-94 349.0 312 62.2
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.3e-91 339.3 313 60.7
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 7.4e-91 338.6 353 54.4
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 4.5e-72 276.2 602 33.6
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 5.2e-68 262.7 530 36.4
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.7e-56 223.8 453 35.1
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.2e-51 208.4 450 32.7
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 7.5e-51 205.7 491 32.0
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.0e-44 185.3 239 43.1
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 4.9e-42 176.4 238 47.9
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.1e-41 175.3 171 57.3
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.9e-34 150.6 213 41.8
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 2.0e-27 127.9 187 48.7
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 9.9e-27 125.6 106 61.3
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 2.2e-26 124.4 187 47.6
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 5.6e-22 109.8 90 65.6
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 1.7e-18 98.2 161 44.1
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.3e-17 92.4 237 31.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 1.6e-16 91.7 131 43.5
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 1.0e-15 89.0 89 52.8
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 3.0e-15 87.4 93 48.4
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.1e-12 79.0 110 42.7
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.5e-11 75.1 112 42.0
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 2.6e-11 74.3 112 41.1
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 4.9e-10 70.1 94 43.6
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 4.2e-09 67.0 56 64.3
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.6e-08 63.5 93 43.0
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 1.0e-07 62.4 142 32.4
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.0e-07 62.4 38 65.8
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.7e-07 61.6 93 41.9
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 5.1e-07 60.1 34 79.4
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 1.9e-06 58.2 79 49.4


User provided reference genes

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