Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007242 Sechium edule HOM05D004004 ORTHO05D003284 5.3e-58 227.6 128 100.0
Sed0026549 Sechium edule HOM05D004004 ORTHO05D003284 1.9e-23 112.8 131 61.1
MELO3C007853.2 Cucumis melo HOM05D004004 ORTHO05D003284 4.0e-21 105.1 132 60.6
ClCG01G019820 Citrullus lanatus HOM05D004004 ORTHO05D003284 2.6e-20 102.4 76 69.7
CsaV3_6G046550 Cucumis sativus L. HOM05D004004 ORTHO05D003284 5.7e-20 101.3 76 68.4
Dinv40018 Davidia involucrata HOM05D004004 ORTHO05D003284 9.1e-18 94.0 128 48.4
Haze_03875 Corylus avellana HOM05D004004 ORTHO05D003284 8.5e-16 87.4 131 47.3
Haze_03857 Corylus avellana HOM05D004004 ORTHO05D003284 1.5e-15 86.7 131 47.3
Nitab4.5_0003001g0020 Nicotiana tabacum HOM05D004004 ORTHO05D003284 2.1e-14 82.8 89 51.7
Nitab4.5_0005980g0010 Nicotiana tabacum HOM05D004004 ORTHO05D003284 2.1e-14 82.8 90 50.0
Sopen02g029610 Solanum pennellii HOM05D004004 ORTHO05D003284 2.1e-14 82.8 89 50.6
Ciclev10027136m.g Citrus clementina HOM05D004004 ORTHO05D003284 1.0e-13 80.5 130 41.5
TAR381G1189 Trochodendron aralioides HOM05D004004 ORTHO05D003284 1.0e-13 80.5 129 40.3
Migut.L00026 Erythranthe guttata HOM05D004004 ORTHO05D003284 2.3e-13 79.3 79 58.2
QL06p035435 Quercus lobata HOM05D004004 ORTHO05D003284 2.3e-13 79.3 86 54.7
Lj2g0016762 Lotus japonicus HOM05D004004 ORTHO05D003284 3.0e-13 79.0 89 52.8
Peaxi162Scf00418g00071 Petunia axillaris HOM05D004004 ORTHO05D003284 4.0e-13 78.6 84 53.6
Phvul.002G033800 Phaseolus vulgaris HOM05D004004 ORTHO05D003284 4.0e-13 78.6 86 54.7
CSS0049012 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 5.2e-13 78.2 84 54.8
Cfa006895 Carpinus fangiana HOM05D004004 ORTHO05D003284 5.2e-13 78.2 127 44.1
Potri.005G120200 Populus trichocarpa HOM05D004004 ORTHO05D003284 5.2e-13 78.2 123 44.7
Oeu000178.1 Olea europaea HOM05D004004 ORTHO05D003284 6.8e-13 77.8 123 43.1
TPR.G2394 Trifolium pratense HOM05D004004 ORTHO05D003284 6.8e-13 77.8 146 38.4
Potri.007G021200 Populus trichocarpa HOM05D004004 ORTHO05D003284 8.8e-13 77.4 85 52.9
CiPaw.07G049200 Carya illinoinensis HOM05D004004 ORTHO05D003284 1.2e-12 77.0 93 51.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.5e-12 76.6 85 50.6
Duzib187G1158 Durio zibethinus HOM05D004004 ORTHO05D003284 2.0e-12 76.3 131 42.0
Glyma.11G071500 Glycine max HOM05D004004 ORTHO05D003284 2.0e-12 76.3 87 52.9
Prupe.7G158500 Prunus persica HOM05D004004 ORTHO05D003284 2.0e-12 76.3 122 47.5
Sabra07G0018100 Salix brachista HOM05D004004 ORTHO05D003284 2.6e-12 75.9 86 52.3
RcHm_v2.0_Chr2g0100871 Rosa chinensis HOM05D004004 ORTHO05D003284 3.4e-12 75.5 126 42.9
Cpa.g.sc6.165 Carica papaya HOM05D004004 ORTHO05D003284 4.4e-12 75.1 134 41.0
SalBow5G1136 Salvia bowleyana HOM05D004004 ORTHO05D003284 4.4e-12 75.1 75 54.7
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.7e-12 74.7 79 55.7
FAN23G2735 Fragaria x ananassa HOM05D004004 ORTHO05D003284 5.7e-12 74.7 79 55.7
FAN28G2460 Fragaria x ananassa HOM05D004004 ORTHO05D003284 5.7e-12 74.7 79 55.7
Hund13999 Selenicereus undatus HOM05D004004 ORTHO05D003284 5.7e-12 74.7 80 51.2
CiPaw.08G139700 Carya illinoinensis HOM05D004004 ORTHO05D003284 7.5e-12 74.3 85 54.1
FvH4_1g12761 Fragaria vesca HOM05D004004 ORTHO05D003284 1.3e-11 73.6 79 54.4
CANSAT01G1672 Cannabis sativa HOM05D004004 ORTHO05D003284 1.7e-11 73.2 80 52.5
Potri.018G148900 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.7e-11 73.2 82 46.3
Duzib147G0117 Durio zibethinus HOM05D004004 ORTHO05D003284 2.2e-11 72.8 73 53.4
AUR62015036 Chenopodium quinoa HOM05D004004 ORTHO05D003284 2.8e-11 72.4 76 51.3
HanXRQChr14g0440601 Helianthus annuus HOM05D004004 ORTHO05D003284 2.8e-11 72.4 85 47.1
TWI53G0327 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 2.8e-11 72.4 79 50.6
MD02G1143000 Malus domestica HOM05D004004 ORTHO05D003284 3.7e-11 72.0 85 50.6
RcHm_v2.0_Chr6g0301541 Rosa chinensis HOM05D004004 ORTHO05D003284 4.8e-11 71.6 122 37.7
Nn5g29686 Nelumbo nucifera HOM05D004004 ORTHO05D003284 6.3e-11 71.2 122 34.4
DCAR_025966 Daucus carota HOM05D004004 ORTHO05D003284 8.3e-11 70.9 84 52.4
Medtr5g020960 Medicago truncatula HOM05D004004 ORTHO05D003284 8.3e-11 70.9 75 48.0
VMungo1215G3070 Vigna mungo HOM05D004004 ORTHO05D003284 1.1e-10 70.5 72 54.2
Eucgr.I02406 Eucalyptus grandis HOM05D004004 ORTHO05D003284 1.4e-10 70.1 89 44.9
MD15G1256400 Malus domestica HOM05D004004 ORTHO05D003284 1.8e-10 69.7 75 52.0
FAN26G1971 Fragaria x ananassa HOM05D008813 ORTHO05D003284 2.4e-10 69.3 79 51.9
MBI10_g00769_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 2.4e-10 69.3 72 50.0
PSO541G0719 Papaver somniferum HOM05D004004 ORTHO05D003284 3.1e-10 68.9 82 46.3
TAR381G0545 Trochodendron aralioides HOM05D000607 ORTHO05D003284 3.1e-10 68.9 122 37.7
CAN.G358.44 Capsicum annuum HOM05D004004 ORTHO05D003284 7.0e-10 67.8 72 51.4
Manes.01G138700 Manihot esculenta HOM05D004004 ORTHO05D003284 1.2e-09 67.0 72 51.4
PGR119G0532 Punica granatum HOM05D004004 ORTHO05D003284 1.2e-09 67.0 85 47.1
Atru.chr13.424 Acer truncatum HOM05D004004 ORTHO05D003284 2.0e-09 66.2 122 36.1
MBI18_g28925_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 2.0e-09 66.2 122 31.1
TAR633G0312 Trochodendron aralioides HOM05D004004 ORTHO05D003284 2.0e-09 66.2 122 37.7
Actinidia19203 Actinidia chinensis HOM05D004004 ORTHO05D003284 3.5e-09 65.5 132 38.6
EL10As8g23910 Beta vulgaris HOM05D004004 ORTHO05D003284 3.5e-09 65.5 74 45.9
GSVIVG01036224001 Vitis vinifera HOM05D004004 ORTHO05D003284 3.5e-09 65.5 121 38.8
Hma1.2p1_0775F.1_g216490 Hydrangea macrophylla HOM05D004004 ORTHO05D003284 4.5e-09 65.1 121 36.4
Os04g0661100 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 5.9e-09 64.7 71 47.9
PSO675G0710 Papaver somniferum HOM05D004004 ORTHO05D003284 5.9e-09 64.7 72 45.8
Dinv42931 Davidia involucrata HOM05D004004 ORTHO05D003284 7.7e-09 64.3 74 44.6
Dinv43169 Davidia involucrata HOM05D004004 ORTHO05D003284 7.7e-09 64.3 74 44.6
Manes.02G097000 Manihot esculenta HOM05D004004 ORTHO05D003284 1.7e-08 63.2 72 48.6
Prupe.1G375500 Prunus persica HOM05D004004 ORTHO05D003284 1.7e-08 63.2 122 35.2
Zm00001eb432750 Zea mays HOM05D004004 ORTHO05D003284 1.7e-08 63.2 81 46.9
MBI16_g26156_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 2.9e-08 62.4 85 43.5
Dinv42932 Davidia involucrata HOM05D004004 ORTHO05D003284 3.8e-08 62.0 74 43.2
Dinv43168 Davidia involucrata HOM05D004004 ORTHO05D003284 3.8e-08 62.0 74 43.2
ECA238G4041 Erigeron canadensis HOM05D004004 ORTHO05D003284 3.8e-08 62.0 83 44.6
Eucgr.F01872 Eucalyptus grandis HOM05D004004 ORTHO05D003284 3.8e-08 62.0 122 35.2
FvH4_2g14740 Fragaria vesca HOM05D004004 ORTHO05D003284 3.8e-08 62.0 84 44.0
Gohir.A12G062900 Gossypium hirsutum HOM05D004004 ORTHO05D003284 3.8e-08 62.0 73 47.9
Gorai.008G065800 Gossypium raimondii HOM05D004004 ORTHO05D003284 3.8e-08 62.0 73 47.9
Actinidia01655 Actinidia chinensis HOM05D004004 ORTHO05D003284 5.0e-08 61.6 84 41.7
Gohir.D12G062800 Gossypium hirsutum HOM05D004004 ORTHO05D003284 5.0e-08 61.6 73 47.9
Aqoxy6G01169 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 6.5e-08 61.2 71 47.9
CANSAT25G0030 Cannabis sativa HOM05D004004 ORTHO05D003284 6.5e-08 61.2 122 33.6
Prupe.8G018500 Prunus persica HOM05D004004 ORTHO05D003284 6.5e-08 61.2 81 44.4
Actinidia22847 Actinidia chinensis HOM05D004004 ORTHO05D003284 8.5e-08 60.8 120 33.3
CiPaw.08G059800 Carya illinoinensis HOM05D004004 ORTHO05D003284 8.5e-08 60.8 122 36.9
Lsat_1_v5_gn_2_77660 Lactuca sativa HOM05D004004 ORTHO05D003284 8.5e-08 60.8 89 44.9
MD15G1023400 Malus domestica HOM05D004004 ORTHO05D003284 8.5e-08 60.8 80 43.8
Nn1g04907 Nelumbo nucifera HOM05D004004 ORTHO05D003284 1.1e-07 60.5 116 37.9
Psat2g157520 Pisum sativum HOM05D004004 ORTHO05D003284 1.1e-07 60.5 88 36.4
SEGI_19145 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 1.1e-07 60.5 83 43.4
ECA238G0774 Erigeron canadensis HOM05D004004 ORTHO05D003284 1.5e-07 60.1 85 37.6
MBI18_g28922_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 1.9e-07 59.7 122 31.1
Actinidia38530 Actinidia chinensis HOM05D004004 ORTHO05D003284 2.5e-07 59.3 86 39.5
Rhsim06G0029400 Rhododendron simsii HOM05D004004 ORTHO05D003284 2.5e-07 59.3 122 32.0
QL03p011303 Quercus lobata HOM05D004004 ORTHO05D003284 5.5e-07 58.2 75 38.7
A02p39410 Brassica napus HOM05D008255 ORTHO05D003284 7.2e-07 57.8 123 33.3
BraA02t08910Z Brassica rapa HOM05D008255 ORTHO05D003284 7.2e-07 57.8 123 33.3
Manes.05G156200 Manihot esculenta HOM05D000607 ORTHO05D003284 7.2e-07 57.8 122 33.6
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 9.4e-07 57.4 72 43.1
Haze_22541 Corylus avellana HOM05D004004 ORTHO05D003284 9.4e-07 57.4 72 43.1
HanXRQChr14g0440621 Helianthus annuus HOM05D004004 ORTHO05D003284 9.4e-07 57.4 83 43.4
MD08G1026800 Malus domestica HOM05D004004 ORTHO05D003284 9.4e-07 57.4 122 33.6
Ah.02g125000 Amaranthus hybridus HOM05D004004 ORTHO05D003284 1.2e-06 57.0 85 42.4
Actinidia22522 Actinidia chinensis HOM05D004004 ORTHO05D003284 2.1e-06 56.2 109 33.9
Aqoxy6G01170 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 2.1e-06 56.2 100 39.0
PGSC0003DMG400038828 Solanum tuberosum HOM05D004004 ORTHO05D003284 2.1e-06 56.2 70 51.4
Migut.N00981 Erythranthe guttata HOM05D004004 ORTHO05D003284 2.7e-06 55.8 75 41.3
FvH4_2g14710 Fragaria vesca HOM05D004004 ORTHO05D003284 2.7e-06 55.8 75 37.3
FAN15G2223 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.7e-06 55.8 75 37.3
FAN24G1883 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.7e-06 55.8 75 37.3
SEGI_40269 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 2.7e-06 55.8 124 33.1
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 2.7e-06 55.8 122 32.0
CSS0023371 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 3.6e-06 55.5 122 33.6
TWI12G0300 Tripterygium wilfordii HOM05D000607 ORTHO05D003284 3.6e-06 55.5 77 41.6
BcaC03g17875 Brassica carinata HOM05D008255 ORTHO05D003284 4.7e-06 55.1 84 39.3
Potri.002G032800 Populus trichocarpa HOM05D004004 ORTHO05D003284 4.7e-06 55.1 113 34.5
Atru.chr12.1510 Acer truncatum HOM05D004004 ORTHO05D003284 6.1e-06 54.7 123 34.1
CANSAT80G0904 Cannabis sativa HOM05D004004 ORTHO05D003284 6.1e-06 54.7 79 41.8
Nn1g09210 Nelumbo nucifera HOM05D004004 ORTHO05D003284 6.1e-06 54.7 74 36.5
CARHR186920 Cardamine hirsuta HOM05D008255 ORTHO05D003284 8.0e-06 54.3 74 37.8
CiPaw.08G139600 Carya illinoinensis HOM05D004004 ORTHO05D003284 8.0e-06 54.3 129 34.9
Psat2g157480 Pisum sativum HOM05D010322 ORTHO05D012006 8.0e-06 54.3 76 43.4
PGR031G0975 Punica granatum HOM05D004004 ORTHO05D003284 8.0e-06 54.3 72 36.1


User provided reference genes

Program Settings