Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 1.4e-22 109.0 64 100.0
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 1.1e-19 99.4 64 92.2
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.7e-18 94.7 64 85.9
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 5.9e-18 93.6 64 85.9
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 5.0e-17 90.5 64 82.8
Sed0003950 Sechium edule HOM05D005524 ORTHO05D005392 5.2e-14 80.5 64 71.9
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 1.2e-13 79.3 64 71.9
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 3.7e-12 74.3 64 70.3
Sed0021947 Sechium edule HOM05D005524 ORTHO05D005392 3.7e-12 74.3 51 88.2
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.4e-11 72.4 64 70.3
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 5.4e-11 70.5 64 67.2
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 5.4e-11 70.5 64 67.2
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 5.4e-11 70.5 64 67.2
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 7.0e-11 70.1 64 65.6
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 7.0e-11 70.1 62 67.7
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-10 69.3 64 64.1
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-10 69.3 64 64.1
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-10 69.3 64 64.1
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 1.2e-10 69.3 64 64.1
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 1.2e-10 69.3 64 64.1
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 1.6e-10 68.9 64 65.6
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 1.6e-10 68.9 64 64.1
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 1.6e-10 68.9 64 65.6
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.6e-10 68.9 64 67.2
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 2.0e-10 68.6 64 62.5
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 2.7e-10 68.2 64 64.1
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 2.7e-10 68.2 64 64.1
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 2.7e-10 68.2 64 64.1
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 2.7e-10 68.2 64 64.1
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 2.7e-10 68.2 64 64.1
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 4.6e-10 67.4 64 64.1
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 4.6e-10 67.4 67 68.7
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 1.0e-09 66.2 64 65.6
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.3e-09 65.9 65 66.2
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.7e-09 65.5 65 66.2
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 3.0e-09 64.7 65 66.2
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 3.9e-09 64.3 64 64.1
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 1.1e-08 62.8 65 66.2
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.9e-08 62.0 64 59.4
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 2.5e-08 61.6 65 63.1
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 2.5e-08 61.6 65 63.1
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.5e-08 61.6 64 64.1
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 2.5e-08 61.6 65 63.1
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.3e-08 61.2 64 64.1
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 5.6e-08 60.5 65 61.5
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 5.6e-08 60.5 64 60.9
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 5.6e-08 60.5 65 63.1
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 5.6e-08 60.5 64 62.5
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 61.5
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 61.5
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 60.0
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 61.5
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 61.5
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 61.5
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 60.0
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 7.3e-08 60.1 65 61.5
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 9.5e-08 59.7 65 60.0
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 9.5e-08 59.7 67 59.7
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.2e-07 59.3 64 57.8
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 1.2e-07 59.3 59 62.7
MELO3C009064.2 Cucumis melo HOM05D019173 ORTHO05D005392 2.1e-07 58.5 65 60.0
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 2.8e-07 58.2 65 60.0
Lalb_Chr03g0033981 Lupinus albus HOM05D005524 ORTHO05D005392 2.8e-07 58.2 62 61.3
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-07 57.8 65 60.0
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 3.6e-07 57.8 65 60.0
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 3.6e-07 57.8 65 60.0
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 3.6e-07 57.8 65 60.0
Sed0023384 Sechium edule HOM05D005524 ORTHO05D005392 3.6e-07 57.8 55 67.3
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 4.7e-07 57.4 67 56.7
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 4.7e-07 57.4 64 59.4
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 4.7e-07 57.4 64 54.7
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 6.2e-07 57.0 65 56.9
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 6.2e-07 57.0 64 60.9
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 1.1e-06 56.2 64 50.0
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.4e-06 55.8 67 55.2
CsaV3_4G031450 Cucumis sativus L. HOM05D019173 ORTHO05D005392 1.8e-06 55.5 60 63.3
Lalb_Chr12g0205751 Lupinus albus HOM05D005524 ORTHO05D005392 4.0e-06 54.3 63 60.3
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.2e-06 53.9 64 51.6
DCAR_029662 Daucus carota HOM05D005524 ORTHO05D005392 6.8e-06 53.5 67 53.7
Lalb_Chr01g0015271 Lupinus albus HOM05D005524 ORTHO05D005392 6.8e-06 53.5 62 53.2
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.9e-06 53.1 64 51.6
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 8.9e-06 53.1 64 56.2


User provided reference genes

Program Settings