Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.5e-272 942.2 468 100.0
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 8.5e-255 883.2 489 89.8
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.4e-249 865.9 457 93.0
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 6.5e-247 857.1 457 92.3
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 2.3e-244 848.6 471 88.1
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.2e-218 762.3 457 82.3
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.4e-217 759.6 457 82.1
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 9.1e-217 756.9 457 81.4
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 7.7e-216 753.8 457 80.5
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.0e-215 753.4 457 82.3
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 2.9e-215 751.9 457 80.5
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-215 751.9 457 80.5
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.9e-215 751.9 457 80.5
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.1e-214 750.0 457 80.5
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 2.5e-214 748.8 457 80.3
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 2.5e-214 748.8 457 80.5
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 6.1e-213 744.2 459 80.4
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 4.0e-212 741.5 458 80.8
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.2e-211 740.0 456 79.8
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.2e-211 740.0 458 80.1
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.7e-210 736.1 457 79.0
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.2e-210 735.7 457 77.9
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 2.8e-210 735.3 457 79.0
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.8e-210 735.3 457 79.0
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.4e-209 733.0 457 78.8
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.2e-209 730.3 458 77.3
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.2e-208 729.9 446 80.0
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.5e-208 728.0 458 77.1
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 5.9e-208 727.6 457 78.8
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.3e-207 726.5 456 77.9
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.3e-207 726.5 457 79.0
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.3e-207 725.7 458 77.1
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 5.0e-207 724.5 445 78.7
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 6.6e-207 724.2 457 77.5
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.5e-206 723.0 458 78.4
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.3e-206 721.8 456 76.3
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.3e-206 721.8 441 79.1
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.8e-205 718.8 458 77.9
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.3e-204 715.7 451 78.9
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 5.2e-204 714.5 458 76.6
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 8.9e-204 713.8 446 80.0
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 8.9e-204 713.8 440 78.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.2e-203 713.4 451 78.3
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 3.4e-203 711.8 446 79.6
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 3.4e-203 711.8 446 79.6
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 3.4e-203 711.8 443 79.9
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 5.8e-203 711.1 459 76.0
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 7.5e-203 710.7 446 79.4
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 7.5e-203 710.7 446 79.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 9.8e-203 710.3 444 78.4
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 9.8e-203 710.3 444 78.4
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.3e-202 709.9 457 75.9
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 3.7e-202 708.4 446 79.1
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.1e-201 706.8 458 76.2
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.1e-201 706.8 458 78.2
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.9e-201 706.1 446 79.1
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 2.4e-201 705.7 424 81.1
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.4e-201 705.7 446 78.7
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 1.2e-200 703.4 426 81.0
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.2e-200 703.4 459 75.2
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.6e-200 703.0 451 77.8
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 6.0e-200 701.0 457 75.5
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 7.8e-200 700.7 459 76.3
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.7e-199 699.5 465 74.8
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 3.3e-198 695.3 426 80.3
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.3e-198 695.3 435 77.9
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 9.5e-198 693.7 446 76.2
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 9.5e-198 693.7 447 76.5
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.6e-197 693.0 457 73.5
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.6e-197 693.0 463 74.1
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 6.2e-197 691.0 426 79.6
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.8e-196 689.5 445 75.3
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.8e-196 689.5 460 74.8
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 6.8e-196 687.6 449 73.7
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 4.4e-195 684.9 457 73.7
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 7.5e-195 684.1 457 74.0
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 2.9e-194 682.2 480 71.2
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 6.4e-194 681.0 457 74.4
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.1e-193 680.2 471 74.3
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 1.9e-193 679.5 471 73.5
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 3.2e-193 678.7 448 75.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 4.1e-193 678.3 458 73.8
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.1e-193 678.3 458 71.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 9.2e-193 677.2 471 73.9
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.1e-192 676.0 457 73.7
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.0e-192 674.5 442 74.0
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-191 672.9 442 74.0
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 3.0e-191 672.2 425 77.2
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 3.9e-191 671.8 471 72.2
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.1e-190 670.2 458 72.9
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.9e-190 669.5 445 76.2
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 4.3e-190 668.3 472 72.9
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 7.3e-190 667.5 413 78.5
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.5e-190 667.2 435 74.7
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 4.7e-189 664.8 473 71.9
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 5.2e-188 661.4 472 71.2
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 6.8e-188 661.0 448 75.4
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 2.6e-187 659.1 472 71.2
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 5.8e-187 657.9 467 71.7
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.3e-186 656.8 458 71.0
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 1.7e-186 656.4 471 71.1
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.8e-184 647.5 445 71.9
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 7.8e-184 647.5 566 61.1
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 8.1e-181 637.5 440 69.1
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.8e-180 634.4 457 69.6
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.7e-178 629.8 494 65.6
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 3.8e-178 628.6 420 73.1
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.1e-177 624.4 462 68.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 9.2e-177 624.0 450 68.2
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 6.0e-176 621.3 450 68.2
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 2.3e-175 619.4 361 81.2
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 6.6e-175 617.8 462 67.7
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.1e-174 617.1 450 67.3
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.9e-174 616.3 424 70.8
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 4.4e-171 605.1 430 68.8
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 6.4e-170 601.3 453 66.9
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.5e-166 590.1 443 66.6
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 5.3e-164 581.6 372 76.1
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.9e-161 573.2 411 68.4
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.4e-161 571.6 446 67.9
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.8e-159 566.6 409 66.3
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.5e-155 553.5 363 74.1
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 5.7e-150 535.0 398 69.6
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 2.8e-149 532.7 445 59.1
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.3e-143 513.8 430 61.4
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.6e-141 506.9 428 60.3
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.6e-141 506.9 359 68.8
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.8e-141 505.4 346 70.8
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.1e-140 502.7 432 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.9e-137 493.4 455 56.9
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.0e-135 487.6 442 56.3
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 2.9e-130 469.5 323 71.5
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 5.5e-129 465.3 395 60.8
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.5e-110 401.7 285 68.1
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.7e-109 399.4 336 62.5
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.2e-91 341.3 208 82.2
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.5e-89 333.6 262 65.6
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 6.1e-88 328.9 214 77.6
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 4.4e-86 322.8 236 64.4
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.1e-79 301.6 439 42.4
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.6e-75 287.7 198 74.2
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 5.1e-66 256.1 181 73.5
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 4.2e-52 209.9 153 71.9
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 4.5e-46 189.9 139 69.1
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 5.8e-38 162.9 150 56.0
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 6.5e-37 159.5 209 45.9
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 4.6e-35 153.3 149 56.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 6.9e-23 112.8 61 91.8
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.2e-12 77.4 56 66.1


User provided reference genes

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