Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 3.6e-45 184.5 89 100.0
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.1e-30 136.3 85 83.5
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 3.2e-30 134.8 84 81.0
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 8.5e-23 110.2 92 65.2
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.2e-22 107.8 92 64.1
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.5e-22 107.5 89 62.9
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 9.4e-22 106.7 89 65.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.2e-21 106.3 91 67.0
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.7e-21 104.4 89 62.9
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.7e-21 104.4 92 63.0
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 8.0e-21 103.6 89 62.9
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 3.0e-20 101.7 87 64.4
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.4e-19 97.8 89 58.4
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 5.7e-19 97.4 89 58.4
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 7.5e-19 97.1 89 58.4
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.8e-19 96.7 85 63.5
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-18 96.3 93 57.0
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-18 95.9 88 58.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.2e-18 95.5 83 60.2
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 2.2e-18 95.5 89 51.7
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.7e-18 94.7 81 61.7
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 4.8e-18 94.4 57 87.7
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 8.3e-18 93.6 88 58.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.1e-17 93.2 89 59.6
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.1e-17 93.2 78 64.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.1e-17 93.2 85 62.4
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 3.1e-17 91.7 89 56.2
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.4e-17 90.9 80 61.2
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 9.1e-17 90.1 89 58.4
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.0e-16 89.0 82 56.1
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 2.7e-16 88.6 82 57.3
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.5e-16 88.2 88 54.5
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.5e-16 88.2 78 61.5
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.5e-16 87.8 84 56.0
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 4.5e-16 87.8 83 57.8
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.7e-16 87.0 84 58.3
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-15 86.7 85 56.5
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.7e-15 85.9 89 58.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.9e-15 85.1 82 59.8
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 5.0e-15 84.3 82 57.3
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 5.0e-15 84.3 85 56.5
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.0e-15 84.3 78 60.3
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 6.6e-15 84.0 96 52.1
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-14 83.2 82 54.9
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.1e-14 83.2 83 55.4
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.9e-14 82.4 83 56.6
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.9e-14 82.4 87 55.2
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.9e-14 82.4 84 52.4
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.5e-14 82.0 83 56.6
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.3e-14 81.6 85 52.9
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.3e-14 81.6 86 53.5
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.2e-14 81.3 86 53.5
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 5.5e-14 80.9 86 53.5
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 5.5e-14 80.9 88 52.3
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.5e-14 80.9 82 54.9
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 5.5e-14 80.9 81 59.3
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 9.5e-14 80.1 82 54.9
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 9.5e-14 80.1 82 53.7
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.2e-13 79.7 84 56.0
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.6e-13 79.3 87 54.0
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-13 79.3 82 58.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.6e-13 79.3 82 58.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.6e-13 79.3 82 56.1
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.1e-13 79.0 82 53.7
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 2.1e-13 79.0 82 58.5
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 3.6e-13 78.2 85 50.6
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.6e-13 78.2 88 52.3
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 4.7e-13 77.8 89 47.2
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 4.7e-13 77.8 85 55.3
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.7e-13 77.8 87 54.0
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 6.1e-13 77.4 77 54.5
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 6.1e-13 77.4 89 53.9
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.0e-12 76.6 83 55.4
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 1.4e-12 76.3 77 51.9
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.4e-12 76.3 82 57.3
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.8e-12 75.9 80 53.8
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 1.8e-12 75.9 77 53.2
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 2.3e-12 75.5 77 51.9
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.3e-12 75.5 83 53.0
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.3e-12 75.5 83 54.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 2.3e-12 75.5 82 52.4
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.3e-12 75.5 83 54.2
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 3.0e-12 75.1 86 54.7
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.0e-12 75.1 81 48.1
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.0e-12 74.7 82 53.7
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 5.2e-12 74.3 83 54.2
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 5.2e-12 74.3 82 52.4
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 6.8e-12 73.9 82 57.3
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 6.8e-12 73.9 82 54.9
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 8.9e-12 73.6 53 67.9
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 8.9e-12 73.6 82 51.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 8.9e-12 73.6 82 51.2
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 8.9e-12 73.6 90 50.0
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.2e-11 73.2 80 52.5
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-11 73.2 82 54.9
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.2e-11 73.2 87 49.4
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.5e-11 72.8 82 48.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.5e-11 72.8 85 50.6
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.0e-11 72.4 83 50.6
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.0e-11 72.4 87 55.2
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.6e-11 72.0 84 52.4
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 2.6e-11 72.0 82 54.9
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 3.4e-11 71.6 82 52.4
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.4e-11 71.2 84 52.4
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 4.4e-11 71.2 77 57.1
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 5.7e-11 70.9 82 50.0
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 5.7e-11 70.9 85 48.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 7.5e-11 70.5 84 51.2
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 7.5e-11 70.5 85 51.8
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.5e-11 70.5 78 51.3
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.5e-11 70.5 85 51.8
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 9.8e-11 70.1 82 51.2
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 9.8e-11 70.1 84 51.2
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 9.8e-11 70.1 84 47.6
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 9.8e-11 70.1 79 46.8
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 9.8e-11 70.1 79 46.8
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-10 69.7 84 50.0
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.3e-10 69.7 83 49.4
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.3e-10 69.7 82 52.4
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 1.7e-10 69.3 67 58.2
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 2.8e-10 68.6 77 48.1
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.7e-10 68.2 83 51.8
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-10 68.2 83 51.8
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.7e-10 68.2 83 48.2
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 3.7e-10 68.2 94 45.7
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 8.3e-10 67.0 96 44.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.3e-10 67.0 82 52.4
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.1e-09 66.6 84 47.6
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.1e-09 66.6 84 51.2
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.1e-09 66.6 85 50.6
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.1e-09 66.6 77 54.5
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.4e-09 66.2 82 47.6
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.8e-09 65.9 79 53.2
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.4e-09 65.5 58 60.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 2.4e-09 65.5 87 50.6
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.1e-09 65.1 84 50.0
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 5.4e-09 64.3 83 49.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 5.4e-09 64.3 81 43.2
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 7.0e-09 63.9 77 53.2
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 7.0e-09 63.9 77 53.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 7.0e-09 63.9 77 51.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 9.2e-09 63.5 77 50.6
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 1.2e-08 63.2 42 69.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.2e-08 63.2 79 48.1
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.6e-08 62.8 82 48.8
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-08 62.4 79 50.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.0e-08 62.4 90 45.6
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 2.0e-08 62.4 90 44.4
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.7e-08 62.0 34 88.2
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 3.5e-08 61.6 81 46.9
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 3.5e-08 61.6 77 51.9
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 3.5e-08 61.6 81 46.9
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.5e-08 61.6 82 48.8
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.5e-08 61.6 76 47.4
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 4.5e-08 61.2 79 49.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 5.9e-08 60.8 81 46.9
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 5.9e-08 60.8 81 46.9
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 7.8e-08 60.5 81 48.1
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 7.8e-08 60.5 79 46.8
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 7.8e-08 60.5 82 43.9
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-07 59.7 79 49.4
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.3e-07 59.7 77 46.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.7e-07 59.3 84 46.4
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 2.3e-07 58.9 79 46.8
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.3e-07 58.9 36 75.0
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 2.9e-07 58.5 76 47.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 5.0e-07 57.8 85 47.1
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 5.0e-07 57.8 91 45.1
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.0e-07 57.8 80 45.0
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 6.6e-07 57.4 58 56.9
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.6e-07 57.0 80 47.5
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 1.1e-06 56.6 54 59.3
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.1e-06 56.6 80 45.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.9e-06 55.8 76 46.1


User provided reference genes

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