Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 4.8e-149 531.2 276 100.0
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 3.7e-133 478.4 254 92.1
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 4.8e-133 478.0 254 90.9
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 1.1e-132 476.9 254 90.9
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.2e-107 393.7 229 81.2
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 4.6e-107 391.7 253 75.9
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.3e-106 390.2 225 82.2
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 1.7e-106 389.8 253 74.7
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 3.9e-106 388.7 248 76.6
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 5.0e-106 388.3 244 76.6
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 8.6e-106 387.5 243 74.9
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 8.6e-106 387.5 225 80.9
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.1e-105 387.1 238 77.7
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 7.3e-105 384.4 241 76.8
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 9.5e-105 384.0 291 67.4
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 1.2e-104 383.6 241 76.8
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 1.2e-104 383.6 228 79.4
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 2.1e-104 382.9 230 78.7
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 8.0e-104 380.9 291 67.0
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 8.0e-104 380.9 242 74.8
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 2.3e-103 379.4 221 81.0
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.1e-103 379.0 246 73.2
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 3.1e-103 379.0 225 78.2
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 3.1e-103 379.0 241 75.9
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 3.1e-103 379.0 233 78.5
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 5.2e-103 378.3 227 79.7
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 6.8e-103 377.9 237 75.9
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 6.8e-103 377.9 238 76.9
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 6.8e-103 377.9 277 68.2
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 8.9e-103 377.5 269 68.8
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 8.9e-103 377.5 246 73.2
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.2e-102 377.1 233 78.5
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 1.2e-102 377.1 246 72.8
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 1.5e-102 376.7 239 75.3
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.5e-102 376.7 246 73.6
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 2.0e-102 376.3 238 76.1
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 2.6e-102 375.9 248 73.8
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.4e-102 375.6 239 74.1
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 3.4e-102 375.6 225 78.2
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 3.4e-102 375.6 281 66.2
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.4e-102 375.2 225 78.2
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 5.8e-102 374.8 243 73.3
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 5.8e-102 374.8 266 71.1
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 7.5e-102 374.4 236 75.0
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 9.8e-102 374.0 229 76.4
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.1e-100 370.5 234 76.9
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.9e-100 369.8 234 75.2
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.2e-100 369.0 291 65.6
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 4.1e-100 368.6 248 72.6
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 4.1e-100 368.6 269 67.3
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 4.1e-100 368.6 223 77.1
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 5.4e-100 368.2 242 72.3
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 7.0e-100 367.9 227 75.3
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 9.2e-100 367.5 249 72.3
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.2e-99 367.1 231 74.0
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 2.0e-99 366.3 241 73.4
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 3.5e-99 365.5 233 74.7
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 3.5e-99 365.5 231 73.6
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 7.8e-99 364.4 246 72.4
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.0e-98 364.0 227 75.8
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 1.3e-98 363.6 228 75.4
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.7e-98 363.2 241 73.0
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 3.9e-98 362.1 238 72.7
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 3.9e-98 362.1 229 76.0
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 6.6e-98 361.3 249 69.1
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 8.6e-98 360.9 254 68.5
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.1e-97 360.5 236 72.9
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.9e-97 359.8 240 72.1
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 4.3e-97 358.6 248 69.8
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 9.5e-97 357.5 237 70.9
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 9.5e-97 357.5 237 70.9
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 9.5e-97 357.5 237 70.9
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 1.6e-96 356.7 228 75.4
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 2.1e-96 356.3 250 70.0
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 4.7e-96 355.1 226 74.3
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.1e-95 354.0 244 70.9
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.8e-95 353.2 238 70.6
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 6.8e-95 351.3 258 66.3
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 4.4e-94 348.6 244 70.1
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 7.5e-94 347.8 239 72.4
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.9e-93 345.9 276 62.0
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.1e-92 344.0 276 61.2
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.4e-92 343.6 254 69.7
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.9e-92 343.2 233 71.7
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 1.9e-92 343.2 226 72.6
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 7.1e-92 341.3 234 68.4
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 2.1e-91 339.7 234 68.8
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 2.7e-91 339.3 281 61.2
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 4.6e-91 338.6 230 69.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.4e-87 327.0 211 75.8
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 2.4e-87 326.2 255 65.5
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 3.1e-87 325.9 253 66.0
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 5.2e-87 325.1 258 65.5
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 1.7e-85 320.1 222 73.0
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 5.4e-84 315.1 226 66.8
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 5.1e-82 308.5 219 66.7
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 8.7e-82 307.8 230 62.2
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 1.1e-81 307.4 207 72.0
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 2.1e-80 303.1 260 60.8
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 2.1e-80 303.1 239 63.2
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 5.2e-79 298.5 226 64.6
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 9.0e-79 297.7 221 64.3
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 4.4e-78 295.4 258 60.1
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 4.9e-77 292.0 236 62.3
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 1.9e-76 290.0 236 61.9
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 2.4e-76 289.7 177 78.0
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 3.2e-76 289.3 227 62.1
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 1.2e-75 287.3 225 60.4
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 4.6e-75 285.4 225 64.0
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 5.1e-74 282.0 168 78.0
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 3.3e-73 279.3 220 63.6
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 1.6e-72 276.9 180 77.8
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 2.4e-71 273.1 179 73.2
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 9.9e-70 267.7 165 78.2
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 1.1e-65 254.2 208 58.7
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 7.4e-65 251.5 171 70.8
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 2.6e-62 243.0 166 70.5
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 1.4e-55 220.7 146 70.5
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 7.1e-52 208.4 133 73.7
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.1e-51 206.8 151 66.2
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.9e-49 200.3 157 68.2
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 6.9e-47 191.8 213 44.6
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 2.0e-46 190.3 132 67.4
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.3e-45 187.6 136 64.7
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 7.9e-43 178.3 214 45.3
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 1.0e-42 177.9 168 58.9
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 3.9e-42 176.0 136 69.1
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 2.8e-40 169.9 132 62.9
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.1e-31 141.4 90 72.2
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 7.2e-28 128.6 152 51.3
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 2.9e-21 106.7 87 57.5
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.5e-20 103.6 131 48.9
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-19 100.9 127 46.5
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 7.5e-17 92.0 80 58.8
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 3.1e-15 86.7 246 28.9
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 1.8e-10 70.9 77 50.6
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 6.8e-10 68.9 113 33.6
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.1e-07 60.1 48 60.4
MCO09G057 Micromonas commoda HOM05D064633 ORTHO05D049274 5.9e-06 55.8 176 27.3


User provided reference genes

Program Settings