Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 1.0e-38 162.9 80 100.0
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 9.0e-32 139.8 80 83.8
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 1.9e-29 132.1 80 82.5
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 6.1e-28 127.1 78 82.1
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 7.9e-28 126.7 78 82.1
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 5.0e-22 107.5 72 72.2
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 8.5e-22 106.7 79 64.6
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.5e-22 106.7 79 64.6
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.5e-22 106.7 79 64.6
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.5e-22 106.7 79 64.6
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.4e-21 105.9 80 63.8
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.5e-21 105.1 78 62.8
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 7.2e-21 103.6 79 63.3
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.6e-20 102.4 80 65.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 2.1e-20 102.1 79 63.3
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 2.1e-20 102.1 80 62.5
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 2.7e-20 101.7 79 65.8
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 4.7e-20 100.9 75 69.3
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 4.7e-20 100.9 79 59.5
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 7.9e-20 100.1 79 60.8
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 7.9e-20 100.1 80 62.5
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 7.9e-20 100.1 77 62.3
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 1.0e-19 99.8 65 67.7
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.8e-19 99.0 80 63.8
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 2.3e-19 98.6 82 62.2
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.0e-19 98.2 80 63.8
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 5.1e-19 97.4 79 59.5
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 5.1e-19 97.4 79 63.3
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 6.7e-19 97.1 79 60.8
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 6.7e-19 97.1 80 62.5
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 1.1e-18 96.3 80 60.0
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 59.5
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 2.6e-18 95.1 79 59.5
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.3e-18 94.7 79 59.5
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 3.3e-18 94.7 77 61.0
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 7.4e-18 93.6 79 59.5
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 9.7e-18 93.2 80 58.8
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.3e-17 92.8 80 60.0
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.3e-17 92.8 79 57.0
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.3e-17 92.8 63 69.8
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.7e-17 92.4 68 66.2
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 1.7e-17 92.4 56 75.0
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.7e-17 92.4 80 56.2
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 2.2e-17 92.0 79 58.2
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 2.2e-17 92.0 79 57.0
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 2.8e-17 91.7 85 54.1
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 2.8e-17 91.7 77 57.1
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 4.8e-17 90.9 65 63.1
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 4.8e-17 90.9 72 59.7
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.3e-17 90.5 80 60.0
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 6.3e-17 90.5 79 59.5
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 6.3e-17 90.5 67 65.7
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 8.2e-17 90.1 67 65.7
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 1.1e-16 89.7 75 56.0
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.4e-16 89.4 75 57.3
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.4e-16 89.4 57 71.9
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 1.8e-16 89.0 80 60.0
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 2.4e-16 88.6 68 64.7
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.4e-16 88.6 115 44.3
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 3.1e-16 88.2 75 57.3
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 3.1e-16 88.2 61 65.6
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 9.1e-16 86.7 77 54.5
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.6e-15 85.9 77 57.1
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 2.0e-15 85.5 56 67.9
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.0e-15 85.5 56 67.9
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 2.6e-15 85.1 70 60.0
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 7.7e-15 83.6 81 58.0
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 7.7e-15 83.6 60 63.3
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 7.7e-15 83.6 77 54.5
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.0e-14 83.2 109 45.0
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 2.2e-14 82.0 64 59.4
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 2.2e-14 82.0 60 63.3
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.8e-14 81.3 57 64.9
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 3.8e-14 81.3 64 59.4
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 6.5e-14 80.5 60 60.0
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 1.5e-13 79.3 58 62.1
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 1.5e-13 79.3 58 62.1
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 1.5e-13 79.3 58 62.1
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 1.5e-13 79.3 58 62.1
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 4.2e-13 77.8 64 56.2
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 7.2e-13 77.0 57 61.4
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 9.4e-13 76.6 68 54.4
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 9.4e-13 76.6 65 55.4
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 3.6e-12 74.7 135 38.5
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 4.7e-12 74.3 81 49.4
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 8.0e-12 73.6 39 84.6
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.8e-11 72.4 39 84.6
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.0e-11 71.6 79 46.8
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 5.2e-11 70.9 57 54.4
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-11 70.5 52 67.3
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.1e-10 69.7 39 82.1
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 1.1e-10 69.7 68 45.6
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.0e-10 68.9 50 60.0
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 2.2e-09 65.5 38 76.3


User provided reference genes

Program Settings