Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 2.1e-67 258.8 128 100.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.4e-50 202.2 128 81.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.3e-44 181.8 134 72.4
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.4e-41 171.8 134 70.1
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 4.5e-33 144.8 128 63.3
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.9e-30 134.0 92 72.8
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.0e-29 132.1 130 56.2
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.4e-28 128.3 130 56.9
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.4e-28 128.3 130 56.9
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 9.7e-28 127.1 128 57.8
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.7e-27 126.3 130 56.9
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.7e-27 125.2 131 55.7
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.7e-27 125.2 130 56.2
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.8e-27 124.8 131 55.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.8e-27 124.8 128 54.7
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.4e-26 123.2 126 55.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.4e-26 122.5 129 53.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 7.0e-26 120.9 129 53.5
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.5e-25 119.8 131 54.2
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.0e-25 119.4 131 51.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 3.5e-25 118.6 91 64.8
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 3.5e-25 118.6 117 58.1
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 3.5e-25 118.6 125 52.8
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.5e-25 118.2 127 54.3
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 7.7e-25 117.5 130 53.8
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 3.8e-24 115.2 128 53.9
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 3.8e-24 115.2 126 54.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 5.0e-24 114.8 131 50.4
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 5.0e-24 114.8 126 51.6
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.5e-23 113.2 88 65.9
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.9e-23 112.8 129 49.6
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 3.2e-23 112.1 125 53.6
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.4e-23 110.5 125 52.0
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.2e-22 110.2 132 52.3
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.6e-22 109.8 130 50.0
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.7e-22 108.2 134 48.5
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.7e-22 108.2 124 50.8
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 6.1e-22 107.8 132 50.8
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 6.1e-22 107.8 130 53.1
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.4e-21 106.7 127 49.6
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 6.7e-21 104.4 125 52.8
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.5e-20 103.2 126 51.6
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.5e-20 103.2 126 51.6
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.5e-20 103.2 129 46.5
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 1.5e-20 103.2 132 50.8
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.0e-20 102.8 126 46.8
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.6e-20 102.4 126 47.6
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.6e-20 102.4 130 50.8
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 3.3e-20 102.1 126 46.8
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 3.3e-20 102.1 131 48.1
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 4.4e-20 101.7 128 43.8
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.4e-20 101.7 126 46.8
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.7e-20 101.3 123 50.4
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.7e-20 101.3 140 42.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 5.7e-20 101.3 138 49.3
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 5.7e-20 101.3 137 46.0
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.7e-20 101.3 133 48.1
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.2e-19 99.4 125 45.6
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.8e-19 99.0 130 49.2
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.8e-19 99.0 133 48.1
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.7e-19 98.6 126 46.8
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 4.8e-19 98.2 137 46.7
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 6.3e-19 97.8 124 48.4
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.2e-19 97.4 87 57.5
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.1e-18 97.1 125 46.4
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 1.4e-18 96.7 125 46.4
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.4e-18 96.7 91 53.8
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.4e-18 96.7 141 43.3
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.4e-18 96.7 125 51.2
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.4e-18 95.9 126 46.0
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.4e-18 95.9 128 42.2
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.4e-18 95.9 123 48.8
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.1e-18 95.5 125 49.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.1e-18 95.5 126 48.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.1e-18 95.1 128 48.4
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.3e-18 94.7 126 48.4
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 7.0e-18 94.4 123 46.3
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 7.0e-18 94.4 125 44.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 7.0e-18 94.4 125 44.8
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 7.0e-18 94.4 131 42.0
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 9.1e-18 94.0 125 41.6
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 9.1e-18 94.0 125 45.6
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 9.1e-18 94.0 125 45.6
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 9.1e-18 94.0 116 50.0
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 9.1e-18 94.0 119 50.4
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 9.1e-18 94.0 127 44.9
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.6e-17 93.2 125 43.2
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.6e-17 93.2 125 43.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-17 92.4 89 52.8
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-17 92.4 89 52.8
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-17 92.4 89 52.8
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-17 92.4 89 52.8
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 2.6e-17 92.4 131 42.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.5e-17 92.0 128 45.3
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.5e-17 92.0 127 45.7
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 4.5e-17 91.7 127 48.8
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 4.5e-17 91.7 125 43.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 5.9e-17 91.3 125 43.2
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 5.9e-17 91.3 125 42.4
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.9e-17 91.3 126 46.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.9e-17 91.3 128 45.3
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 7.7e-17 90.9 130 41.5
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 7.7e-17 90.9 130 41.5
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 7.7e-17 90.9 127 44.9
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.7e-17 90.9 126 46.8
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 7.7e-17 90.9 129 47.3
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.0e-16 90.5 123 43.9
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.0e-16 90.5 121 46.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.7e-16 89.7 126 45.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 2.2e-16 89.4 105 50.5
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.2e-16 89.4 86 54.7
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.9e-16 89.0 127 45.7
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.8e-16 88.6 123 43.1
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 6.5e-16 87.8 127 41.7
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 6.5e-16 87.8 112 47.3
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.5e-16 87.4 125 44.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 8.5e-16 87.4 126 46.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-15 87.0 123 45.5
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.1e-15 87.0 86 53.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.5e-15 86.7 95 50.5
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.9e-15 86.3 130 46.9
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.5e-15 85.9 128 43.8
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 3.2e-15 85.5 123 44.7
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 4.2e-15 85.1 140 46.4
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.2e-15 85.1 129 44.2
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 5.5e-15 84.7 100 46.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.5e-15 84.7 118 44.1
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.6e-14 83.2 128 43.0
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.6e-14 83.2 121 46.3
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.6e-14 83.2 125 42.4
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.1e-14 82.8 97 51.5
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 3.6e-14 82.0 89 49.4
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.6e-14 82.0 92 46.7
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.7e-14 81.6 116 46.6
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 8.0e-14 80.9 131 44.3
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.4e-13 80.1 116 44.8
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.4e-13 80.1 127 40.2
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.8e-13 79.7 114 42.1
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.8e-13 79.7 91 50.5
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.8e-13 79.7 91 50.5
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.8e-13 79.7 92 52.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 4.0e-13 78.6 92 47.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 8.8e-13 77.4 91 42.9
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 8.8e-13 77.4 126 44.4
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-12 76.6 120 39.2
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.5e-12 76.6 125 41.6
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.5e-12 76.6 123 44.7
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.0e-12 76.3 124 40.3
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 2.6e-12 75.9 129 39.5
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.5e-12 74.3 116 41.4
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.3e-11 73.6 107 44.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-11 73.6 96 42.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.7e-11 73.2 81 50.6
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.2e-11 72.8 126 42.9
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.2e-11 72.8 128 42.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.2e-11 72.8 88 47.7
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.1e-10 70.5 118 42.4
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.4e-10 70.1 94 40.4
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.4e-10 69.3 127 39.4
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.1e-10 68.9 101 38.6
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 7.0e-10 67.8 129 39.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.1e-10 67.4 121 41.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.2e-09 67.0 112 39.3
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.2e-09 67.0 118 44.1
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.6e-09 66.6 97 42.3
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.6e-09 66.6 123 35.8
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.6e-09 66.6 131 39.7
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.0e-09 66.2 118 39.0
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 2.7e-09 65.9 112 42.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.7e-09 65.9 89 41.6
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.7e-09 65.9 127 39.4
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.5e-09 65.5 131 35.9
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.5e-09 65.1 99 42.4
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 5.9e-09 64.7 132 40.2
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.7e-09 64.3 117 39.3
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 7.7e-09 64.3 86 45.3
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-08 62.8 136 38.2
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.0e-08 61.6 134 35.8
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-07 60.5 81 45.7
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.5e-07 59.3 47 59.6
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.5e-07 59.3 61 54.1
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 9.4e-07 57.4 125 36.0
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-06 57.0 87 39.1
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.1e-06 54.7 94 45.7


User provided reference genes

Program Settings