Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 2.7e-135 485.3 242 100.0
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.4e-98 362.1 235 80.4
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 7.3e-93 344.4 214 81.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 5.6e-85 318.2 191 82.7
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.9e-61 240.0 226 58.4
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 4.3e-61 238.8 228 59.2
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 5.7e-61 238.4 217 61.8
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 7.4e-61 238.0 228 57.9
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.4e-61 238.0 226 57.5
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.3e-60 237.3 226 59.3
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-60 236.9 226 57.5
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.6e-60 236.9 226 58.4
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 3.7e-60 235.7 227 57.3
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.1e-59 234.2 226 56.6
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 9.0e-59 231.1 226 54.4
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.5e-58 230.3 229 54.6
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 2.6e-58 229.6 222 59.5
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.4e-58 229.2 226 57.1
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.4e-58 229.2 227 56.8
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 5.8e-58 228.4 213 58.2
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 5.8e-58 228.4 227 56.8
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.0e-57 227.6 226 54.9
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.0e-57 227.6 200 63.5
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.3e-57 227.3 226 56.2
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.7e-57 226.9 228 55.7
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.7e-57 226.9 222 59.0
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.7e-57 226.9 229 53.3
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 3.8e-57 225.7 226 58.0
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.0e-57 225.3 226 56.6
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 5.0e-57 225.3 199 60.8
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 8.4e-57 224.6 228 57.5
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.4e-56 223.8 222 58.1
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.4e-56 223.8 232 53.9
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.9e-56 223.4 227 56.4
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-56 223.0 222 58.6
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 4.2e-56 222.2 224 57.1
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 9.3e-56 221.1 227 57.3
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 9.3e-56 221.1 231 55.0
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.2e-55 220.7 229 56.8
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.2e-55 220.7 229 55.5
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.2e-55 220.7 231 54.1
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.6e-55 220.3 235 54.9
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.7e-55 219.5 191 61.8
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.7e-55 219.5 234 53.0
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 3.5e-55 219.2 228 55.3
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 6.1e-55 218.4 189 61.9
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 6.1e-55 218.4 191 62.3
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 6.1e-55 218.4 191 61.3
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 6.1e-55 218.4 201 59.7
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 6.1e-55 218.4 201 59.7
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 7.9e-55 218.0 232 54.3
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.0e-54 217.6 228 56.1
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.3e-54 216.5 269 49.4
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.3e-54 216.5 191 62.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.3e-54 216.5 210 58.1
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 2.3e-54 216.5 235 54.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.3e-54 216.5 194 60.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.0e-54 216.1 226 53.5
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 3.9e-54 215.7 227 55.9
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 8.7e-54 214.5 228 54.8
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.7e-54 214.5 191 61.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.7e-54 214.5 191 61.8
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 8.7e-54 214.5 201 58.7
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 8.7e-54 214.5 194 60.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.9e-53 213.4 244 53.3
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.9e-53 213.4 228 53.9
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 4.3e-53 212.2 217 56.2
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 5.7e-53 211.8 228 53.9
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.7e-53 211.8 211 54.0
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 7.4e-53 211.5 191 59.2
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 9.7e-53 211.1 229 56.3
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.2e-52 209.9 226 52.7
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 3.7e-52 209.1 218 56.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 4.8e-52 208.8 309 43.7
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.4e-51 207.2 215 54.4
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.8e-51 206.8 224 52.7
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 3.1e-51 206.1 213 54.9
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 5.3e-51 205.3 205 56.6
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 6.9e-51 204.9 216 53.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.6e-50 203.0 230 53.9
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 5.9e-50 201.8 227 54.6
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.0e-49 201.1 323 41.5
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.3e-49 200.7 218 54.6
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.3e-49 200.7 188 59.6
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.7e-49 200.3 245 50.2
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.7e-49 200.3 220 50.9
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 2.2e-49 199.9 228 52.6
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.8e-49 199.1 212 51.9
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 5.0e-49 198.7 294 43.2
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 6.5e-49 198.4 199 55.3
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.4e-48 197.2 228 50.9
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.5e-48 196.4 211 55.0
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 5.5e-48 195.3 225 52.0
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 9.4e-48 194.5 199 56.3
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.7e-47 193.0 208 53.8
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 3.6e-47 192.6 212 53.3
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 4.6e-47 192.2 200 55.5
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.9e-47 191.4 219 52.1
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.4e-46 190.7 212 51.4
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.8e-46 190.3 217 53.0
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.3e-46 189.9 176 58.0
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 5.1e-46 188.7 195 51.3
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 6.7e-46 188.3 194 55.2
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 8.8e-46 188.0 199 56.8
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.5e-45 187.2 237 49.4
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.5e-45 187.2 198 54.5
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.5e-45 187.2 209 52.2
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 2.0e-45 186.8 189 55.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.3e-45 186.0 202 53.0
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-44 183.7 158 64.6
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 2.2e-44 183.3 226 50.4
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 4.8e-44 182.2 177 58.2
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 6.3e-44 181.8 139 69.8
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-43 181.0 188 55.9
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.4e-43 180.6 197 53.3
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.1e-43 179.5 199 52.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.0e-42 176.8 171 57.9
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.6e-42 176.4 197 52.8
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.9e-42 175.3 246 46.7
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.7e-42 174.9 219 49.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.0e-41 174.5 235 46.4
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.0e-41 174.5 160 61.2
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 3.8e-41 172.6 211 48.8
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.1e-40 171.0 207 48.3
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.1e-40 171.0 228 47.4
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.1e-40 171.0 209 49.3
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 2.5e-40 169.9 228 48.2
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 5.5e-40 168.7 190 53.2
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.2e-39 167.5 210 48.6
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.2e-39 167.5 207 49.8
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 2.7e-39 166.4 210 48.1
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 2.7e-39 166.4 210 48.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 4.7e-39 165.6 223 46.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 6.1e-39 165.2 200 51.0
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.4e-38 164.1 213 48.4
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.8e-38 163.7 196 53.6
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.8e-38 163.7 131 67.2
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.3e-38 163.3 216 46.8
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 5.1e-38 162.2 201 48.8
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 6.7e-38 161.8 142 60.6
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 4.4e-37 159.1 194 48.5
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 7.4e-37 158.3 216 46.3
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.3e-36 157.5 216 46.3
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.7e-36 157.1 190 50.0
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 8.2e-36 154.8 225 42.2
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.4e-35 153.3 153 55.6
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.9e-34 148.7 152 52.0
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.2e-33 146.7 105 67.6
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.9e-33 146.4 106 69.8
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.7e-31 139.0 90 74.4
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.0e-30 136.0 125 57.6
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 8.8e-30 134.8 88 72.7
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 8.8e-30 134.8 88 72.7
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.8e-27 127.1 194 47.4
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.1e-27 125.9 105 58.1
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.2e-26 124.4 155 52.9
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 7.7e-26 121.7 79 70.9
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.0e-22 111.3 164 43.9
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 7.0e-19 98.6 129 48.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.0e-18 97.1 98 59.2
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.5e-18 95.9 210 31.4
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 2.9e-17 93.2 87 49.4
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 8.8e-14 81.6 81 50.6
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 2.4e-11 73.6 137 34.3
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.0e-11 72.0 105 43.8
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 3.8e-09 66.2 40 72.5
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 4.7e-07 59.3 41 63.4
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 4.7e-07 59.3 96 36.5


User provided reference genes

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