Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 9.7e-242 839.7 425 100.0
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 1.8e-232 808.9 425 95.1
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 3.5e-231 804.7 425 94.1
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 7.8e-223 776.9 425 89.9
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.3e-222 776.2 425 89.9
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 1.7e-222 775.8 425 90.4
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 2.3e-222 775.4 425 89.9
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 5.0e-222 774.2 424 90.6
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 8.6e-222 773.5 425 88.7
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 3.3e-221 771.5 425 89.4
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 5.6e-221 770.8 425 88.5
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 5.6e-221 770.8 425 88.7
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 7.3e-221 770.4 425 89.2
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 1.6e-220 769.2 425 89.4
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 6.1e-220 767.3 425 88.9
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 8.0e-220 766.9 425 88.5
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.8e-219 765.8 425 88.5
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 2.3e-219 765.4 425 88.7
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 3.0e-219 765.0 425 87.8
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 6.8e-219 763.8 425 88.0
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 8.9e-219 763.5 425 87.3
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 1.2e-218 763.1 425 86.8
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 1.2e-218 763.1 425 87.5
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.0e-218 762.3 425 88.2
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.6e-218 761.9 425 88.0
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 2.6e-218 761.9 425 87.1
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 3.4e-218 761.5 425 88.0
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 3.4e-218 761.5 425 87.8
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 5.7e-218 760.8 425 88.0
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 7.5e-218 760.4 425 87.1
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 3.7e-217 758.1 425 87.3
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 6.4e-217 757.3 425 87.3
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 2.4e-216 755.4 425 86.8
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 3.2e-216 755.0 425 86.6
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 5.4e-216 754.2 425 86.1
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 7.0e-216 753.8 424 87.0
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.2e-216 753.4 424 87.0
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 3.5e-215 751.5 425 86.8
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 4.6e-215 751.1 425 85.9
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 5.9e-215 750.7 425 86.6
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.9e-215 750.7 424 86.6
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 5.9e-215 750.7 424 86.8
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-215 750.4 424 86.6
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.0e-214 750.0 422 87.9
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 2.3e-214 748.8 425 85.4
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 3.9e-214 748.0 417 88.0
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.5e-213 746.1 425 85.6
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 4.3e-213 744.6 425 85.6
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 5.6e-213 744.2 424 85.8
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.2e-212 743.0 425 86.8
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 2.8e-212 741.9 425 86.8
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 3.6e-212 741.5 425 86.6
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 3.6e-212 741.5 425 86.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 3.6e-212 741.5 425 86.6
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.6e-212 741.5 438 84.0
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 3.6e-212 741.5 426 85.7
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 6.2e-212 740.7 425 84.9
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.1e-211 740.0 425 86.8
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 1.4e-211 739.6 425 86.4
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.4e-211 739.6 426 84.7
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 1.4e-211 739.6 449 82.6
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 1.8e-211 739.2 425 86.4
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 1.8e-211 739.2 425 86.4
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 1.8e-211 739.2 415 87.5
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.8e-211 739.2 425 84.5
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.0e-211 738.0 414 87.7
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 1.2e-210 736.5 423 86.1
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.5e-210 736.1 425 85.6
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.0e-210 735.7 426 84.0
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 2.0e-210 735.7 425 83.8
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.6e-210 735.3 425 85.6
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 7.5e-210 733.8 425 83.5
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 7.5e-210 733.8 425 85.9
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 9.8e-210 733.4 425 84.0
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 1.7e-209 732.6 425 85.9
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 4.9e-209 731.1 420 86.4
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 1.1e-208 729.9 425 83.5
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.1e-208 729.9 425 85.6
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-208 729.9 420 85.7
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 2.4e-208 728.8 425 85.6
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 7.0e-208 727.2 425 84.2
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 2.7e-207 725.3 471 78.8
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 6.0e-207 724.2 425 83.5
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 1.3e-206 723.0 425 86.8
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 3.9e-206 721.5 425 83.5
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 1.1e-205 719.9 415 85.5
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 1.5e-205 719.5 438 81.7
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 7.3e-205 717.2 425 82.8
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 1.6e-204 716.1 424 82.5
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 2.0e-202 709.1 413 85.7
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.5e-202 707.2 425 80.2
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 7.5e-202 707.2 425 80.9
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 1.7e-201 706.1 425 81.4
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 6.4e-201 704.1 425 81.2
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 8.3e-201 703.7 424 81.4
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 2.4e-200 702.2 425 80.0
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 5.4e-200 701.0 417 81.8
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 9.2e-200 700.3 425 80.0
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 8.1e-196 687.2 425 81.4
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 5.2e-195 684.5 425 81.6
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 1.2e-194 683.3 425 81.4
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.7e-193 679.5 425 80.2
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.8e-193 678.3 419 78.8
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 5.4e-192 674.5 423 77.1
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.6e-190 667.5 425 77.9
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.5e-189 666.4 423 74.9
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 1.9e-189 666.0 423 75.7
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 5.6e-189 664.5 433 77.4
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 9.6e-189 663.7 416 79.1
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.8e-188 662.1 423 75.9
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 4.0e-187 658.3 425 78.1
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 1.1e-184 650.2 402 82.6
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 7.1e-184 647.5 413 78.7
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.1e-184 647.5 418 76.8
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 6.0e-183 644.4 423 75.4
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.6e-182 641.0 415 76.9
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 8.7e-182 640.6 475 70.7
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 8.7e-182 640.6 442 73.1
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.1e-181 640.2 364 86.3
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-181 639.4 416 75.2
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-181 638.3 413 76.5
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 9.6e-181 637.1 611 56.8
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 9.6e-181 637.1 425 72.9
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.1e-180 636.0 406 77.3
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 3.6e-180 635.2 340 93.5
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.2e-175 620.2 411 74.9
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-174 616.7 413 74.8
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.5e-173 613.2 353 83.3
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 7.4e-173 610.9 357 85.2
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 4.8e-172 608.2 339 87.9
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 2.6e-170 602.4 410 72.2
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 2.9e-169 599.0 344 84.3
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.7e-167 592.4 430 69.3
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.3e-166 589.3 432 68.8
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-165 585.1 403 72.2
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 2.2e-161 572.8 415 70.4
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 2.7e-159 565.8 415 65.3
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-155 553.5 407 69.0
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.8e-155 553.1 312 86.5
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 2.2e-148 529.6 303 86.5
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.6e-146 522.7 419 66.3
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 8.5e-145 517.7 422 61.8
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.8e-140 502.7 284 85.2
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 5.2e-134 481.9 442 58.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.7e-133 478.4 286 81.1
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 3.1e-131 472.6 436 57.3
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 6.3e-116 421.8 237 86.5
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 7.0e-115 418.3 431 50.3
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 9.5e-112 407.9 252 79.8
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.2e-103 380.9 436 47.9
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.1e-94 349.7 465 44.3
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.1e-86 324.7 171 91.8
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 5.2e-86 322.4 410 43.2
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 5.2e-86 322.4 199 80.4
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 5.1e-73 279.3 239 60.3
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 1.1e-72 278.1 168 80.4
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 1.6e-71 274.2 155 84.5
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 2.4e-67 260.4 166 77.1
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 6.0e-58 229.2 253 53.0
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 1.8e-57 227.6 158 74.7
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 4.3e-56 223.0 161 68.9
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 2.2e-36 157.5 96 81.2
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 4.3e-32 143.3 86 79.1
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 1.3e-31 141.7 86 79.1
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 3.1e-30 137.1 233 38.6
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 3.1e-30 137.1 126 61.9
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.4e-24 116.7 72 79.2
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 7.0e-22 109.4 61 85.2
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 2.6e-21 107.5 129 48.8
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 4.2e-19 100.1 95 58.9
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 9.4e-19 99.0 55 80.0
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 3.3e-16 90.5 168 36.9
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 4.4e-16 90.1 55 72.7
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 4.1e-14 83.6 48 81.2
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 9.1e-14 82.4 230 28.7
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 9.4e-11 72.4 47 74.5
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 3.6e-10 70.5 114 36.8
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.4e-09 68.6 70 48.6
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 4.0e-09 67.0 42 71.4
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 2.0e-08 64.7 38 81.6
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 3.4e-08 63.9 32 81.2
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 5.7e-08 63.2 46 60.9
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 8.3e-07 59.3 30 83.3


User provided reference genes

Program Settings