Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 2494.2 1227 100.0
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 0.0e+00 1842.4 1236 75.8
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 0.0e+00 1599.7 1237 67.6
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 0.0e+00 1231.1 890 70.9
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1189.9 1291 51.4
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1185.6 1273 52.3
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1169.1 1321 49.9
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1155.2 1265 51.9
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1146.0 1278 50.1
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1133.2 1270 50.4
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1117.4 1269 50.5
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1114.0 1269 50.4
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1107.8 1275 50.0
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1107.0 1280 50.1
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1102.0 1250 49.4
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1101.3 1338 47.5
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1096.3 1226 49.7
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1090.5 1312 47.4
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 0.0e+00 1085.1 1293 49.0
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 0.0e+00 1079.3 1264 48.4
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1079.3 1327 47.2
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 0.0e+00 1075.5 1275 49.0
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1075.1 1274 48.8
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 8.4e-312 1073.9 1313 47.1
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 7.6e-311 1070.8 1260 48.1
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 1.7e-310 1069.7 1259 48.6
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 1.1e-306 1057.0 1280 48.8
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 1.9e-306 1056.2 1273 47.9
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 4.3e-306 1055.0 1235 48.6
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 7.3e-306 1054.3 1295 46.9
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 1.9e-301 1039.6 1287 48.4
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 9.2e-301 1037.3 1250 48.4
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 2.7e-292 1009.2 1288 46.0
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 6.0e-292 1008.1 1278 46.0
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 8.7e-275 951.0 1291 43.8
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 1.8e-272 943.3 1096 48.8
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 2.6e-271 939.5 1267 44.0
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 7.6e-271 937.9 1272 43.4
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 9.9e-271 937.6 1303 42.4
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.3e-270 937.2 1267 43.9
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 3.8e-270 935.6 1272 43.6
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 4.9e-270 935.3 1270 44.3
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.4e-269 933.7 1250 44.6
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.5e-268 929.1 1268 43.3
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 6.0e-268 928.3 982 52.7
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 2.9e-262 909.4 1302 42.0
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 7.1e-261 904.8 991 51.3
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 2.7e-260 902.9 1288 41.7
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 2.0e-255 886.7 1467 39.5
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 3.4e-255 885.9 1295 42.5
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 8.4e-254 881.3 1295 41.5
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 1.5e-250 870.5 1276 41.7
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 2.9e-246 856.3 1309 40.6
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 2.7e-244 849.7 1233 41.7
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 6.1e-244 848.6 1290 41.2
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.1e-237 827.8 1281 39.3
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.4e-235 820.8 838 52.9
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 5.0e-222 775.8 1247 39.3
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 3.2e-221 773.1 1242 38.7
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 5.5e-221 772.3 1234 39.0
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 1.2e-220 771.2 976 45.2
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 6.1e-220 768.8 1234 39.0
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 4.8e-217 759.2 1246 37.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.1e-216 756.1 847 48.5
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 7.0e-216 755.4 1237 38.2
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 9.1e-216 755.0 1237 38.1
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 3.5e-215 753.1 1233 37.4
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 1.0e-214 751.5 1243 37.7
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 4.0e-211 739.6 1164 39.8
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.5e-210 737.6 839 47.8
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 2.2e-209 733.8 1246 37.2
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 3.2e-205 719.9 886 47.4
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.4e-203 714.5 1278 36.2
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 4.1e-184 649.8 863 43.1
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 4.1e-184 649.8 908 42.7
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 4.1e-176 623.2 1111 37.5
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 2.7e-175 620.5 1472 32.1
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 3.0e-174 617.1 1250 34.5
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 8.1e-156 555.8 1084 36.5
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 9.6e-141 505.8 577 47.8
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 8.7e-126 456.1 844 35.7
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 5.3e-123 446.8 1117 29.8
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 6.9e-123 446.4 880 35.3
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 2.6e-122 444.5 374 62.0
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 2.6e-122 444.5 1347 28.4
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 1.8e-118 431.8 787 33.8
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 3.3e-117 427.6 373 59.8
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 6.3e-116 423.3 384 55.7
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 3.1e-115 421.0 377 58.4
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.6e-111 408.7 476 47.1
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.1e-111 408.3 372 55.1
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 6.7e-110 403.3 901 32.5
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 4.5e-106 390.6 438 49.5
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 4.1e-99 367.5 318 57.9
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 9.5e-88 329.7 392 46.9
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.2e-71 276.2 292 50.7
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 2.4e-67 261.9 452 42.0
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 5.4e-67 260.8 254 54.3
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.0e-65 255.0 318 45.9
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.3e-64 251.5 352 40.3
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.3e-64 251.5 352 40.3
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 2.1e-63 248.8 1044 24.4
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 3.6e-63 248.1 521 31.1
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 7.5e-61 240.4 192 59.9
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 9.2e-59 233.4 224 54.5
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 4.1e-51 208.0 244 43.9
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 3.0e-49 201.8 559 27.9
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 5.1e-49 201.1 185 54.6
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.8e-46 192.6 487 30.4
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 1.4e-43 183.0 182 51.6
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 7.6e-37 160.6 321 36.1
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 2.2e-36 159.1 265 37.0
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 3.8e-36 158.3 149 51.7
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 1.1e-32 146.7 352 29.5
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 8.4e-28 130.6 187 38.0
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.6e-26 126.3 187 39.0
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 4.8e-23 114.8 143 45.5
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 4.8e-23 114.8 184 39.1
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 6.5e-20 104.4 138 41.3
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.2e-18 100.1 301 30.9
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 8.7e-17 94.0 182 35.7
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.1e-16 93.6 158 34.2
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 2.8e-15 89.0 104 42.3
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.3e-12 80.1 94 44.7
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 5.0e-12 78.2 82 52.4
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 8.5e-12 77.4 72 48.6
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 8.5e-12 77.4 99 41.4
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 1.6e-10 73.2 94 44.7
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 6.1e-10 71.2 94 42.6
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 7.9e-10 70.9 82 48.8
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 7.9e-10 70.9 79 43.0
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.3e-09 70.1 86 45.3
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.8e-09 69.7 82 48.8
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.0e-09 68.9 82 47.6
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.3e-08 65.5 69 47.8
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 7.4e-08 64.3 51 60.8
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 2.8e-07 62.4 55 54.5
BcaC06g35590 Brassica carinata HOM05D033522 ORTHO05D024133 4.8e-07 61.6 50 58.0
Nitab4.5_0002179g0030 Nicotiana tabacum HOM05D005395 ORTHO05D006352 8.2e-07 60.8 73 43.8
BcaC09g50095 Brassica carinata HOM05D034322 ORTHO05D024133 2.4e-06 59.3 69 49.3
HPP92_011289 Vanilla planifolia HOM05D005395 ORTHO05D006352 9.1e-06 57.4 199 25.6


User provided reference genes

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