Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 2.8e-95 352.1 190 100.0
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.3e-57 226.1 189 73.5
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.6e-53 212.6 191 70.2
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 8.4e-52 207.6 189 67.7
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 3.5e-50 202.2 189 66.7
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 2.1e-39 166.4 187 55.6
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 3.1e-38 162.5 186 54.8
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.5e-37 160.2 187 52.4
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 2.0e-37 159.8 192 54.7
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 2.0e-37 159.8 192 54.7
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.4e-37 159.1 189 53.4
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 4.5e-37 158.7 180 55.6
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 7.6e-37 157.9 183 53.6
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 7.6e-37 157.9 190 54.7
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.0e-36 157.5 185 53.0
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.3e-36 157.1 182 53.3
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 2.2e-36 156.4 177 53.1
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-35 154.1 183 55.2
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.4e-35 153.7 186 53.8
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.4e-35 153.7 187 50.8
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.4e-35 153.7 180 51.1
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.5e-35 152.9 186 52.7
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 3.2e-35 152.5 183 51.9
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 7.1e-35 151.4 181 49.2
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 9.3e-35 151.0 184 52.7
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.6e-34 150.2 187 51.3
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.1e-34 149.8 181 50.3
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.5e-34 149.1 180 51.1
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 4.6e-34 148.7 177 54.2
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 6.0e-34 148.3 186 49.5
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 6.0e-34 148.3 183 51.9
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.0e-34 148.3 178 50.0
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.0e-33 147.5 184 49.5
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.3e-33 147.1 181 48.6
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.8e-33 146.7 179 49.7
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-33 146.7 185 50.8
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.3e-33 146.4 174 46.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.9e-33 145.6 180 52.8
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 5.1e-33 145.2 195 51.8
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 5.1e-33 145.2 176 49.4
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.1e-33 145.2 187 49.7
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 5.1e-33 145.2 187 48.1
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 8.7e-33 144.4 180 50.6
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.1e-32 144.1 185 50.3
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 1.1e-32 144.1 180 51.7
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.9e-32 143.3 187 48.7
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.5e-32 142.9 185 50.3
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.3e-32 142.1 185 49.2
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.6e-31 140.2 180 51.7
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.6e-31 140.2 184 50.5
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.6e-31 140.2 184 50.5
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 2.1e-31 139.8 187 48.1
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.1e-31 139.8 186 50.5
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.1e-31 139.8 180 49.4
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 2.8e-31 139.4 184 46.2
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 6.3e-31 138.3 189 47.6
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 8.2e-31 137.9 187 49.2
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 1.1e-30 137.5 192 44.3
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 1.1e-30 137.5 192 44.3
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 1.4e-30 137.1 192 47.4
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.8e-30 136.7 177 46.9
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.8e-30 136.7 177 46.9
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.8e-30 136.7 189 47.1
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.4e-30 136.3 211 41.2
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.4e-30 136.3 182 50.0
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 3.1e-30 136.0 177 46.9
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.1e-30 136.0 182 46.2
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 5.3e-30 135.2 178 46.6
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 6.9e-30 134.8 177 48.6
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 9.0e-30 134.4 182 46.2
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 9.0e-30 134.4 182 46.2
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 9.0e-30 134.4 179 50.3
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.5e-29 133.7 180 47.2
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 1.5e-29 133.7 182 47.8
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 2.0e-29 133.3 194 45.9
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.6e-29 132.9 188 48.9
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.6e-29 132.9 181 47.0
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 2.6e-29 132.9 178 49.4
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 3.4e-29 132.5 175 46.9
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 3.4e-29 132.5 178 46.6
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 4.5e-29 132.1 177 45.2
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 4.5e-29 132.1 177 45.2
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 4.5e-29 132.1 177 45.8
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 4.5e-29 132.1 177 45.8
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 5.9e-29 131.7 184 42.9
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.0e-28 131.0 182 46.7
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-28 130.6 177 45.8
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.3e-28 130.6 184 45.1
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 2.9e-28 129.4 178 44.9
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.9e-28 129.4 179 49.2
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.8e-28 129.0 185 45.9
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 6.5e-28 128.3 173 47.4
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 8.4e-28 127.9 175 45.7
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 8.4e-28 127.9 177 43.5
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.1e-27 127.5 180 46.1
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.4e-27 127.1 180 46.1
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.9e-27 126.7 180 46.1
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 2.5e-27 126.3 175 45.1
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 5.5e-27 125.2 191 43.5
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 5.5e-27 125.2 180 43.3
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 7.2e-27 124.8 175 46.3
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 7.2e-27 124.8 168 51.2
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.6e-26 123.6 180 43.9
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.6e-26 123.6 194 45.9
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 6.1e-26 121.7 191 43.5
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.0e-25 120.9 188 42.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.0e-25 120.9 186 44.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 5.1e-25 118.6 179 44.7
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 6.7e-25 118.2 152 51.3
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.3e-24 115.5 152 50.7
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 7.4e-24 114.8 165 48.5
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.3e-23 114.0 160 48.1
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 3.1e-22 109.4 179 40.8
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 9.0e-22 107.8 152 47.4
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 9.0e-22 107.8 162 48.1
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 2.6e-21 106.3 172 43.6
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 5.9e-21 105.1 153 47.7
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.0e-20 104.4 157 48.4
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.9e-20 102.8 171 42.7
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 1.2e-18 97.4 175 38.9
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.1e-18 96.7 174 40.2
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 4.6e-18 95.5 175 40.0
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 4.6e-18 95.5 175 42.3
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 4.6e-18 95.5 175 42.3
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 6.1e-18 95.1 177 42.9
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 6.1e-18 95.1 177 42.9
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 3.0e-17 92.8 177 42.4
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 3.0e-17 92.8 175 38.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.0e-17 92.8 70 65.7
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 6.7e-17 91.7 182 37.4
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.8e-17 91.3 174 38.5
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.1e-16 90.9 169 40.8
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.0e-16 90.1 175 38.3
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.0e-16 90.1 184 37.5
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.5e-16 89.7 168 40.5
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 3.3e-16 89.4 137 44.5
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.3e-16 89.4 154 44.2
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 5.7e-16 88.6 171 37.4
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.2e-15 86.7 166 39.2
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 1.8e-14 83.6 205 35.1
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 6.9e-14 81.6 184 38.0
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 9.1e-14 81.3 67 62.7
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 3.4e-13 79.3 93 45.2
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 2.9e-12 76.3 190 35.3
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 3.6e-10 69.3 47 70.2
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.4e-09 67.4 188 32.4
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 2.0e-08 63.5 177 29.4
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 3.3e-08 62.8 60 50.0
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 4.4e-08 62.4 184 32.1
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 4.4e-08 62.4 156 32.1
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 2.8e-07 59.7 178 31.5
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 2.8e-07 59.7 152 31.6
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.7e-07 59.3 165 33.3
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.8e-07 58.9 188 35.6
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 4.8e-07 58.9 63 47.6
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 4.8e-07 58.9 180 30.0
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.1e-06 57.8 159 33.3
CDE02G1081 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 1.4e-06 57.4 164 31.7
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 2.4e-06 56.6 182 28.0
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 3.1e-06 56.2 153 32.7
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 3.1e-06 56.2 45 62.2
HPP92_015856 Vanilla planifolia HOM05D004507 ORTHO05D004874 3.1e-06 56.2 127 38.6
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.1e-06 55.8 176 31.8
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.1e-06 55.8 150 30.7
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 5.3e-06 55.5 143 34.3
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 5.3e-06 55.5 180 28.3


User provided reference genes

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