Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 6.0e-112 407.5 207 100.0
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 4.9e-98 361.3 209 89.5
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 1.4e-97 359.8 209 89.5
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 7.1e-97 357.5 209 88.0
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 1.2e-67 260.4 206 67.0
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 2.6e-67 259.2 210 66.7
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 6.5e-66 254.6 201 68.2
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 6.5e-66 254.6 206 67.0
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 3.2e-65 252.3 212 65.1
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 5.5e-65 251.5 206 64.6
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 7.2e-65 251.1 211 64.5
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 1.2e-64 250.4 206 65.5
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 1.6e-64 250.0 215 64.7
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 3.6e-64 248.8 212 65.1
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 8.0e-64 247.7 212 64.6
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 1.0e-63 247.3 222 61.3
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 1.4e-63 246.9 210 64.8
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 1.8e-63 246.5 204 63.7
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 5.2e-63 245.0 200 66.5
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 1.5e-62 243.4 190 67.9
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 1.5e-62 243.4 190 67.9
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 2.0e-62 243.0 196 64.8
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 3.3e-62 242.3 195 66.7
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 5.7e-62 241.5 200 65.0
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 7.5e-62 241.1 204 65.7
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 7.5e-62 241.1 217 63.1
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 9.7e-62 240.7 195 66.2
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 9.7e-62 240.7 225 60.0
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 1.3e-61 240.4 190 68.4
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 1.3e-61 240.4 190 66.8
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 1.7e-61 240.0 208 62.5
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 8.2e-61 237.7 190 67.4
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 8.2e-61 237.7 197 65.5
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 2.4e-60 236.1 205 64.4
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 4.1e-60 235.3 190 66.8
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 5.3e-60 235.0 203 64.0
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 9.1e-60 234.2 190 65.8
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 9.1e-60 234.2 203 63.5
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 1.2e-59 233.8 190 66.8
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.2e-59 233.8 201 63.2
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 1.6e-59 233.4 203 63.5
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 2.7e-59 232.6 195 62.6
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 5.9e-59 231.5 210 61.4
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 7.7e-59 231.1 209 62.7
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 1.7e-58 229.9 193 62.7
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 1.7e-58 229.9 214 61.7
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 3.8e-58 228.8 210 60.0
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 8.5e-58 227.6 211 59.7
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 1.1e-57 227.3 200 61.0
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 1.1e-57 227.3 207 60.9
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 4.2e-57 225.3 200 61.0
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 7.2e-57 224.6 194 60.8
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 9.4e-57 224.2 212 59.0
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 1.6e-56 223.4 201 62.2
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 1.6e-56 223.4 209 60.3
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 3.6e-56 222.2 188 63.3
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 4.7e-56 221.9 190 59.5
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 1.8e-55 219.9 216 57.9
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 2.3e-55 219.5 179 63.1
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 2.3e-55 219.5 217 59.9
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 5.2e-55 218.4 198 59.6
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 6.8e-55 218.0 206 59.2
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 4.4e-54 215.3 190 59.5
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 5.7e-54 214.9 233 54.1
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 4.8e-53 211.8 188 58.5
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 8.3e-53 211.1 207 58.9
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 1.4e-52 210.3 206 58.3
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 1.4e-52 210.3 206 57.8
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 1.8e-52 209.9 203 54.7
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 2.4e-52 209.5 199 58.3
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 5.4e-52 208.4 168 63.1
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 2.7e-51 206.1 204 54.9
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 1.3e-50 203.8 258 48.8
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.3e-50 203.8 148 70.9
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 1.3e-50 203.8 206 55.3
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 2.9e-50 202.6 174 60.9
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 6.5e-50 201.4 144 72.2
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 1.9e-49 199.9 212 52.4
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 2.8e-48 196.1 148 68.9
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 6.1e-48 194.9 148 68.9
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 1.4e-47 193.7 188 56.9
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 3.0e-47 192.6 167 61.7
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 3.0e-47 192.6 150 66.7
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 6.8e-47 191.4 221 48.4
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 2.6e-46 189.5 205 55.6
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 4.4e-46 188.7 236 50.8
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 1.3e-45 187.2 201 54.7
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 4.9e-45 185.3 237 51.5
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 4.3e-41 172.2 118 64.4
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 6.1e-40 168.3 139 63.3
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 8.0e-40 167.9 145 57.9
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 2.3e-39 166.4 142 54.9
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 1.2e-38 164.1 282 39.0
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 1.3e-37 160.6 129 65.9
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 5.4e-36 155.2 171 50.3
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 1.2e-35 154.1 132 59.1
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 2.7e-35 152.9 276 38.4
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 1.9e-33 146.7 124 64.5
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 1.6e-32 143.7 121 65.3
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 2.4e-28 129.8 163 46.6
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 5.4e-28 128.6 102 70.6
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 1.9e-25 120.2 110 60.0
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 3.7e-21 105.9 209 39.2
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 1.6e-19 100.5 98 53.1
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 3.0e-18 96.3 109 39.4
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 9.5e-17 91.3 85 57.6
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 1.6e-16 90.5 88 51.1
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 8.9e-15 84.7 75 61.3
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 3.4e-14 82.8 68 61.8
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.3e-10 70.9 79 50.6
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 7.3e-09 65.1 114 38.6
PSO675G0625 Papaver somniferum HOM05D002397 ORTHO05D002667 8.1e-08 61.6 133 28.6
PGR142G3425 Punica granatum HOM05D002397 ORTHO05D002667 8.1e-08 61.6 155 29.7
PSO017G1677 Papaver somniferum HOM05D002397 ORTHO05D002667 1.1e-07 61.2 133 28.6
EL10Ac3g07388 Beta vulgaris HOM05D002397 ORTHO05D002667 2.4e-07 60.1 135 28.1
CSS0046926 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 5.3e-07 58.9 129 27.1
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 5.3e-07 58.9 105 30.5
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 6.9e-07 58.5 143 28.7
Glyma.15G161000 Glycine max HOM05D002397 ORTHO05D002667 6.9e-07 58.5 143 25.2
Mapoly0066s0117 Marchantia polymorpha HOM05D002397 ORTHO05D002667 9.0e-07 58.2 157 27.4
Gohir.D13G000600 Gossypium hirsutum HOM05D002397 ORTHO05D002667 1.2e-06 57.8 156 27.6
Gorai.013G000500 Gossypium raimondii HOM05D002397 ORTHO05D002667 1.2e-06 57.8 156 27.6
Cre06.g273000 Chlamydomonas reinhardtii HOM05D002397 ORTHO05D002667 1.5e-06 57.4 101 31.7
Oeu034906.1 Olea europaea HOM05D002397 ORTHO05D002667 1.5e-06 57.4 158 29.7
PGR004G1811 Punica granatum HOM05D002397 ORTHO05D002667 1.5e-06 57.4 152 25.0
TAR629G2980 Trochodendron aralioides HOM05D002397 ORTHO05D002667 2.0e-06 57.0 138 25.4
Eucgr.K01707 Eucalyptus grandis HOM05D002397 ORTHO05D002667 2.6e-06 56.6 135 28.9
Gohir.A13G001100 Gossypium hirsutum HOM05D002397 ORTHO05D002667 2.6e-06 56.6 112 31.2
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 2.6e-06 56.6 104 28.8
Nn7g38244 Nelumbo nucifera HOM05D002397 ORTHO05D002667 2.6e-06 56.6 138 27.5
Hund18476 Selenicereus undatus HOM05D007131 ORTHO05D009026 2.6e-06 56.6 131 35.1
SEGI_32624 Sequoiadendron giganteum HOM05D002397 ORTHO05D002667 2.6e-06 56.6 104 28.8
SGA_v2.0_scaffold66G22344 Striga asiatica HOM05D002397 ORTHO05D002667 3.4e-06 56.2 160 26.9
Ah.04g149930 Amaranthus hybridus HOM05D002397 ORTHO05D002667 4.4e-06 55.8 132 27.3
RcHm_v2.0_Chr3g0494981 Rosa chinensis HOM05D002397 ORTHO05D002667 4.4e-06 55.8 135 28.9
ATR0307G077 Amborella trichopoda HOM05D002397 ORTHO05D002667 5.8e-06 55.5 131 29.8
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 7.6e-06 55.1 101 29.7
Cc00_g11370 Coffea canephora HOM05D002397 ORTHO05D002667 7.6e-06 55.1 105 31.4
Potri.015G124700 Populus trichocarpa HOM05D002397 ORTHO05D002667 7.6e-06 55.1 129 26.4
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 9.9e-06 54.7 82 26.8
QL11p016263 Quercus lobata HOM05D002397 ORTHO05D002667 9.9e-06 54.7 128 26.6
GSVIVG01029893001 Vitis vinifera HOM05D002397 ORTHO05D002667 9.9e-06 54.7 112 29.5


User provided reference genes

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