Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.5e-47 192.6 99 100.0
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.2e-39 164.9 96 88.5
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 9.5e-39 163.3 96 87.5
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 3.6e-38 161.4 96 86.5
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 1.5e-36 156.0 93 84.9
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.5e-31 139.4 96 70.8
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.3e-31 137.9 96 72.9
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.3e-31 137.9 96 72.9
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 5.6e-31 137.5 96 72.9
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 7.3e-31 137.1 95 74.7
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 7.3e-31 137.1 95 76.8
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.2e-30 136.3 95 76.8
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.6e-30 136.0 95 76.8
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.6e-30 136.0 96 72.9
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 2.1e-30 135.6 95 73.7
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 3.6e-30 134.8 95 73.7
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 1.8e-29 132.5 96 70.8
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 2.3e-29 132.1 95 73.7
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 4.0e-29 131.3 95 72.6
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 4.0e-29 131.3 95 70.5
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 5.2e-29 131.0 95 72.6
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 5.2e-29 131.0 95 72.6
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.8e-29 130.6 96 68.8
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 8.9e-29 130.2 95 71.6
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 8.9e-29 130.2 95 70.5
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.5e-28 129.4 103 71.8
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 1.5e-28 129.4 96 71.9
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 2.0e-28 129.0 95 71.6
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 3.4e-28 128.3 96 66.7
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 4.4e-28 127.9 95 70.5
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 4.4e-28 127.9 95 70.5
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 5.7e-28 127.5 96 66.7
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 1.3e-27 126.3 96 70.8
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 2.2e-27 125.6 96 66.7
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.9e-27 125.2 95 65.3
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 3.7e-27 124.8 95 68.4
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 4.9e-27 124.4 95 68.4
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 4.9e-27 124.4 95 68.4
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 6.4e-27 124.0 96 64.6
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 6.4e-27 124.0 92 68.5
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 6.4e-27 124.0 103 69.9
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.3e-27 123.6 95 64.2
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 8.3e-27 123.6 95 64.2
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 1.4e-26 122.9 89 68.5
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.8e-26 122.5 96 66.7
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 9.2e-26 120.2 96 63.5
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 1.2e-25 119.8 97 66.0
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 1.6e-25 119.4 96 63.5
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 3.5e-25 118.2 95 66.3
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 5.9e-25 117.5 96 67.7
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 7.8e-25 117.1 96 66.7
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 1.0e-24 116.7 105 66.7
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 1.0e-24 116.7 88 64.8
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 1.3e-24 116.3 95 63.2
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 2.3e-24 115.5 102 62.7
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 3.0e-24 115.2 103 66.0
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 5.0e-24 114.4 106 61.3
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 6.6e-24 114.0 106 62.3
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 6.6e-24 114.0 95 65.3
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 8.6e-24 113.6 96 65.6
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 1.5e-23 112.8 95 66.3
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.5e-23 112.8 96 61.5
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.5e-23 112.8 96 61.5
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.9e-23 112.5 97 64.9
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.3e-23 111.7 96 60.4
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 4.3e-23 111.3 105 58.1
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 5.6e-23 110.9 103 60.2
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 5.6e-23 110.9 96 65.6
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 1.2e-22 109.8 110 57.3
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.2e-22 109.8 108 60.2
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 1.2e-22 109.8 98 62.2
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.6e-22 109.4 105 59.0
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.6e-22 109.4 106 58.5
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 2.8e-22 108.6 106 61.3
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 3.6e-22 108.2 84 65.5
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 3.6e-22 108.2 103 59.2
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 4.7e-22 107.8 96 64.6
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 6.2e-22 107.5 103 58.3
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 6.2e-22 107.5 96 60.4
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 6.2e-22 107.5 103 61.2
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 6.2e-22 107.5 106 57.5
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 8.0e-22 107.1 101 54.5
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.1e-21 106.7 106 57.5
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.1e-21 106.7 106 58.5
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.4e-21 106.3 83 66.3
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.4e-21 106.3 106 57.5
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 1.4e-21 106.3 106 57.5
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 1.8e-21 105.9 104 58.7
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 1.8e-21 105.9 103 58.3
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.8e-21 105.9 106 56.6
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 3.1e-21 105.1 104 55.8
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 5.2e-21 104.4 95 62.1
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 5.2e-21 104.4 103 59.2
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 5.2e-21 104.4 96 59.4
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 5.2e-21 104.4 102 56.9
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 5.2e-21 104.4 96 61.5
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 6.8e-21 104.0 96 59.4
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.8e-21 104.0 86 65.1
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 1.5e-20 102.8 96 57.3
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 2.0e-20 102.4 96 60.4
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 2.6e-20 102.1 102 58.8
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 2.6e-20 102.1 106 57.5
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 3.4e-20 101.7 80 65.0
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 4.4e-20 101.3 105 58.1
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.8e-20 100.9 96 56.2
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 5.8e-20 100.9 105 55.2
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 7.5e-20 100.5 96 57.3
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 7.5e-20 100.5 106 55.7
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 9.8e-20 100.1 96 58.3
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 9.8e-20 100.1 96 55.2
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 9.8e-20 100.1 99 59.6
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 1.3e-19 99.8 95 63.2
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 1.3e-19 99.8 97 61.9
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.3e-19 99.8 104 56.7
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.7e-19 99.4 96 58.3
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.7e-19 99.4 96 58.3
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.7e-19 99.4 106 55.7
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.9e-19 98.6 104 53.8
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 2.9e-19 98.6 79 64.6
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 2.9e-19 98.6 106 53.8
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 3.7e-19 98.2 89 60.7
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 3.7e-19 98.2 102 52.0
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 4.9e-19 97.8 96 55.2
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 6.4e-19 97.4 96 56.2
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 6.4e-19 97.4 96 56.2
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 6.4e-19 97.4 103 55.3
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 8.3e-19 97.1 95 62.1
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 8.3e-19 97.1 97 55.7
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 8.3e-19 97.1 96 55.2
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 8.3e-19 97.1 96 57.3
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.4e-18 96.3 96 54.2
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 1.4e-18 96.3 96 58.3
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.9e-18 95.9 107 53.3
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 1.9e-18 95.9 78 67.9
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 5.4e-18 94.4 96 54.2
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 5.4e-18 94.4 97 54.6
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 5.4e-18 94.4 97 54.6
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 7.0e-18 94.0 97 54.6
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 7.0e-18 94.0 96 54.2
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 7.0e-18 94.0 97 54.6
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 7.0e-18 94.0 102 52.9
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 7.0e-18 94.0 103 54.4
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 7.0e-18 94.0 96 61.5
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 9.2e-18 93.6 87 60.9
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 9.2e-18 93.6 86 61.6
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.6e-17 92.8 96 53.1
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 2.0e-17 92.4 91 56.0
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 2.0e-17 92.4 91 56.0
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 2.7e-17 92.0 90 56.7
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 2.7e-17 92.0 90 56.7
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 2.7e-17 92.0 90 56.7
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 3.5e-17 91.7 95 56.8
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 4.6e-17 91.3 96 53.1
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.8e-17 90.5 96 53.1
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 7.8e-17 90.5 85 57.6
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.0e-16 90.1 95 53.7
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.0e-16 90.1 95 53.7
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.0e-16 90.1 95 53.7
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 3.0e-16 88.6 99 51.5
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.0e-16 88.6 82 61.0
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 6.6e-16 87.4 81 60.5
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 6.6e-16 87.4 81 60.5
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 8.6e-16 87.0 81 59.3
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-15 86.7 95 52.6
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 1.1e-15 86.7 95 52.6
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 1.1e-15 86.7 101 52.5
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.5e-15 86.3 103 50.5
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 1.9e-15 85.9 98 53.1
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 5.6e-15 84.3 79 59.5
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 7.3e-15 84.0 101 52.5
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 9.5e-15 83.6 77 54.5
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 2.1e-14 82.4 102 54.9
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 4.7e-14 81.3 79 58.2
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 4.7e-14 81.3 79 58.2
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 8.1e-14 80.5 79 57.0
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 1.1e-13 80.1 99 45.5
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.5e-12 76.3 80 55.0
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 5.8e-12 74.3 75 54.7
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 4.1e-10 68.2 79 55.7
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 7.1e-10 67.4 55 63.6
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 7.1e-10 67.4 55 63.6
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 1.2e-09 66.6 85 51.8
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.2e-09 66.6 85 48.2
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 3.0e-08 62.0 75 45.3
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 3.6e-06 55.1 66 50.0
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.6e-06 55.1 60 56.7


User provided reference genes

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