Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 1.1e-71 273.1 133 100.0
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 2.3e-64 248.8 135 91.1
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 3.1e-61 238.4 135 88.1
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 5.3e-61 237.7 135 88.1
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 6.5e-51 204.1 133 78.2
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 6.5e-51 204.1 134 75.4
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 8.5e-51 203.8 137 75.9
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.5e-50 202.2 134 74.6
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 7.2e-50 200.7 134 73.1
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 1.2e-49 199.9 131 75.6
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 2.7e-49 198.7 137 72.3
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 6.1e-49 197.6 138 73.2
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 6.1e-49 197.6 134 72.4
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.4e-48 196.4 141 69.5
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.8e-48 196.1 136 72.1
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.8e-48 196.1 136 72.1
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 3.0e-48 195.3 135 71.1
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 5.1e-48 194.5 130 73.8
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 6.7e-48 194.1 137 73.7
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 8.8e-48 193.7 135 69.6
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 2.6e-47 192.2 137 70.8
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 3.3e-47 191.8 134 70.1
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 4.4e-47 191.4 132 71.2
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 4.4e-47 191.4 136 72.1
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 5.7e-47 191.0 133 68.4
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 5.7e-47 191.0 138 70.3
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 9.7e-47 190.3 138 68.8
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 1.3e-46 189.9 135 71.9
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 2.2e-46 189.1 140 67.9
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 2.2e-46 189.1 140 67.9
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 2.2e-46 189.1 130 71.5
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 2.2e-46 189.1 134 70.1
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 3.7e-46 188.3 138 70.3
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 3.7e-46 188.3 146 67.1
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 6.3e-46 187.6 136 68.4
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 8.2e-46 187.2 133 70.7
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 1.4e-45 186.4 146 65.1
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.4e-45 186.4 135 70.4
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 1.4e-45 186.4 138 68.1
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 1.4e-45 186.4 133 68.4
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 2.4e-45 185.7 136 68.4
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 3.1e-45 185.3 145 65.5
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 5.3e-45 184.5 103 81.6
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 7.0e-45 184.1 103 81.6
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 2.6e-44 182.2 145 66.2
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 4.5e-44 181.4 144 66.0
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 4.5e-44 181.4 144 66.0
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 5.9e-44 181.0 143 67.1
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 5.9e-44 181.0 143 67.1
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 5.9e-44 181.0 143 67.1
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 7.7e-44 180.6 144 66.0
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 7.7e-44 180.6 144 66.0
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 7.7e-44 180.6 144 66.0
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 1.0e-43 180.3 148 63.5
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 1.0e-43 180.3 136 68.4
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 1.7e-43 179.5 149 63.1
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 1.7e-43 179.5 134 67.2
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 2.2e-43 179.1 147 63.9
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 2.2e-43 179.1 147 63.9
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 2.2e-43 179.1 136 65.4
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 2.9e-43 178.7 123 73.2
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 2.9e-43 178.7 148 63.5
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 3.8e-43 178.3 140 66.4
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 3.8e-43 178.3 138 67.4
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 6.5e-43 177.6 147 63.9
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 8.5e-43 177.2 139 68.3
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 1.1e-42 176.8 137 65.0
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 1.1e-42 176.8 135 66.7
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 1.4e-42 176.4 136 66.2
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 1.4e-42 176.4 142 64.8
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.9e-42 176.0 131 65.6
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 1.9e-42 176.0 142 64.1
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 2.5e-42 175.6 136 67.6
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 2.5e-42 175.6 131 65.6
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 3.2e-42 175.3 135 65.9
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 3.2e-42 175.3 135 65.9
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 3.2e-42 175.3 135 64.4
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 4.2e-42 174.9 138 67.4
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 5.5e-42 174.5 137 62.0
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 7.2e-42 174.1 144 63.9
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 7.2e-42 174.1 136 66.2
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 9.4e-42 173.7 139 66.2
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 9.4e-42 173.7 131 63.4
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 2.7e-41 172.2 133 66.2
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 2.7e-41 172.2 133 66.2
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 2.7e-41 172.2 134 61.9
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 2.7e-41 172.2 100 78.0
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 4.7e-41 171.4 132 63.6
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 8.0e-41 170.6 140 62.1
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 8.0e-41 170.6 131 64.1
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 2.3e-40 169.1 125 64.0
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 3.9e-40 168.3 132 63.6
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 6.7e-40 167.5 101 78.2
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.1e-39 166.8 138 62.3
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 1.1e-39 166.8 134 64.2
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 1.5e-39 166.4 130 61.5
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 3.3e-39 165.2 123 67.5
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 3.3e-39 165.2 130 62.3
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 9.7e-39 163.7 98 78.6
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 9.7e-39 163.7 98 78.6
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 9.7e-39 163.7 137 61.3
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 1.3e-38 163.3 96 76.0
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 2.4e-37 159.1 99 70.7
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 3.1e-37 158.7 111 70.3
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 4.1e-37 158.3 138 59.4
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 4.1e-37 158.3 138 59.4
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 9.4e-34 147.1 104 65.4
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 1.6e-33 146.4 112 66.1
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 1.8e-32 142.9 99 65.7
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 5.2e-32 141.4 104 64.4
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 8.8e-32 140.6 123 56.1
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 2.6e-31 139.0 97 63.9
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 1.3e-27 126.7 74 81.1
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 1.7e-27 126.3 109 58.7
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 6.5e-27 124.4 110 52.7
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 6.5e-27 124.4 129 48.8
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 1.1e-26 123.6 109 56.0
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 5.5e-26 121.3 75 76.0
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 1.6e-25 119.8 98 52.0
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 3.5e-20 102.1 102 47.1
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 1.7e-19 99.8 52 80.8
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 6.6e-19 97.8 93 47.3
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 4.7e-17 91.7 58 75.9
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 6.8e-16 87.8 74 62.2
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 1.5e-15 86.7 75 62.7
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 1.2e-09 67.0 64 53.1
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 7.5e-07 57.8 55 49.1


User provided reference genes

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