Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.2e-103 379.8 190 100.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 7.0e-91 337.4 190 88.9
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 7.0e-91 337.4 192 90.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 9.2e-91 337.0 190 89.5
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.3e-86 322.4 189 83.6
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.7e-84 316.2 187 80.7
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.1e-83 313.5 190 83.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.2e-83 310.5 188 80.3
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.2e-82 310.1 187 80.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.6e-82 309.7 188 80.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 2.0e-82 309.3 174 84.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.0e-81 307.0 188 79.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.0e-81 307.0 189 78.3
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 8.6e-81 303.9 189 77.8
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.5e-80 303.1 189 77.2
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-80 302.8 187 79.7
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.5e-80 302.4 185 80.5
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.3e-80 302.0 185 80.5
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 9.5e-80 300.4 189 78.8
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-79 299.7 196 75.5
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.6e-79 299.7 187 79.1
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.8e-79 298.9 196 75.5
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 3.6e-79 298.5 192 78.6
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.7e-79 298.1 189 77.2
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.8e-78 296.2 184 77.2
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.1e-78 295.4 189 75.7
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 3.1e-78 295.4 176 79.5
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.0e-78 295.0 173 83.2
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 5.2e-78 294.7 185 77.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.5e-77 293.1 173 80.9
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.5e-77 293.1 175 81.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.0e-77 292.7 190 75.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.6e-77 292.4 190 72.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.3e-76 290.0 173 80.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.9e-76 288.9 172 81.4
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 4.9e-76 288.1 173 80.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 6.4e-76 287.7 174 78.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 8.3e-76 287.3 172 80.8
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.1e-75 287.0 189 75.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.4e-75 286.6 186 74.7
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.9e-75 286.2 186 75.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.9e-75 286.2 190 72.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.4e-75 285.8 184 75.5
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 7.1e-75 284.3 190 73.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 9.2e-75 283.9 186 73.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 9.2e-75 283.9 173 79.2
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.2e-74 283.5 163 83.4
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.6e-74 283.1 186 73.7
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.6e-74 283.1 173 79.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.6e-74 283.1 173 79.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.1e-74 282.7 173 78.0
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 3.5e-74 282.0 187 72.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 4.6e-74 281.6 186 72.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 6.0e-74 281.2 186 72.6
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 7.8e-74 280.8 185 73.5
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 7.8e-74 280.8 191 71.7
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.0e-73 280.4 186 72.0
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-73 279.3 187 74.3
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.3e-73 279.3 174 78.7
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.3e-73 279.3 183 74.3
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.0e-73 278.9 189 72.0
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.9e-73 278.5 187 73.8
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 5.1e-73 278.1 183 73.2
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 6.6e-73 277.7 186 72.0
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.5e-72 276.6 158 85.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.5e-72 276.6 173 78.6
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.3e-72 275.0 175 72.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 7.3e-72 274.2 173 74.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 9.5e-72 273.9 174 75.9
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.2e-71 273.5 190 69.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-71 273.5 173 74.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.6e-71 273.1 183 72.7
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.6e-71 273.1 188 70.7
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.1e-71 272.7 189 71.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.8e-71 272.3 190 69.5
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.7e-71 271.6 173 74.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.7e-71 271.6 190 69.5
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 4.7e-71 271.6 190 69.5
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 6.2e-71 271.2 183 72.1
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 8.1e-71 270.8 170 76.5
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.1e-71 270.8 186 70.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 8.1e-71 270.8 183 70.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-70 270.4 183 72.7
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.8e-70 269.6 173 73.4
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.3e-70 269.2 156 83.3
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 4.0e-70 268.5 189 70.9
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.5e-69 266.5 170 77.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.0e-69 266.2 188 70.2
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.6e-69 265.8 171 73.1
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 3.4e-69 265.4 173 72.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.3e-68 263.5 183 72.1
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.7e-68 263.1 160 78.8
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.7e-68 261.9 162 78.4
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.9e-67 259.6 168 73.2
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.4e-67 259.2 186 62.4
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.1e-67 257.7 168 74.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.7e-66 255.8 169 71.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 6.0e-66 254.6 183 68.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.7e-65 253.1 172 72.7
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.6e-65 251.1 173 70.5
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.6e-65 251.1 173 68.8
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 6.6e-65 251.1 167 73.1
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 8.6e-65 250.8 163 74.8
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.1e-64 250.4 170 72.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-64 250.0 160 73.8
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.5e-64 249.2 161 73.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.5e-64 249.2 161 73.9
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.3e-64 248.8 173 71.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 3.3e-64 248.8 172 69.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 9.6e-64 247.3 172 72.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.1e-63 246.1 172 68.6
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.8e-63 245.7 170 70.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.1e-62 243.8 186 62.9
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.4e-62 243.4 176 69.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.4e-62 243.4 168 67.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.8e-62 243.0 173 67.1
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.2e-62 241.5 160 73.1
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 6.8e-62 241.1 160 72.5
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.5e-61 240.0 157 72.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.0e-61 239.6 163 70.6
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.0e-61 239.6 170 68.2
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 5.8e-61 238.0 168 67.9
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 7.6e-61 237.7 164 67.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-60 236.9 170 66.5
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.3e-60 236.9 173 65.9
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.7e-60 236.5 160 71.9
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.7e-60 236.5 171 67.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.4e-59 232.6 175 64.0
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 5.4e-59 231.5 175 67.4
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.7e-58 229.2 168 68.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 4.6e-58 228.4 168 67.9
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.6e-58 228.4 168 67.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.0e-58 228.0 168 67.9
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 7.8e-58 227.6 134 77.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.1e-56 223.8 190 60.5
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.1e-56 223.8 134 76.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.3e-56 221.9 159 66.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-55 219.9 182 63.2
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.6e-55 218.8 179 59.2
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.6e-53 212.6 150 68.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 3.4e-53 212.2 160 62.5
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.7e-52 209.9 163 63.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 2.2e-52 209.5 166 66.3
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.4e-52 207.6 138 76.1
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.1e-51 207.2 159 59.1
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.9e-51 206.5 176 61.4
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.2e-50 203.8 165 58.2
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.0e-50 201.4 157 60.5
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 7.9e-50 201.1 135 75.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.0e-49 200.7 157 65.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 5.1e-49 198.4 160 61.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.9e-48 196.4 190 56.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.1e-47 191.0 164 63.4
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.0e-46 188.7 131 72.5
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.9e-46 188.0 186 49.5
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.2e-45 187.2 159 59.1
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.2e-44 183.0 169 57.4
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 6.4e-44 181.4 132 66.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.4e-44 181.4 169 58.0
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 8.4e-44 181.0 122 72.1
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.4e-43 180.3 169 58.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 5.1e-41 171.8 142 54.9
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.3e-38 161.8 116 71.6
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.9e-35 153.3 97 75.3
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.6e-34 148.7 90 77.8
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.1e-31 139.8 91 71.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.8e-31 139.4 94 67.0
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 8.2e-31 137.9 175 48.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.1e-30 135.6 93 72.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.1e-30 135.6 148 43.9
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.6e-26 122.1 73 75.3
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.6e-18 95.5 68 72.1
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.8e-17 93.6 79 55.7
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.0e-13 80.1 106 45.3
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-12 75.9 69 55.1
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 9.4e-11 71.2 173 30.6
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-10 70.1 36 83.3
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 3.9e-09 65.9 36 77.8
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.1e-08 64.3 80 43.8
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.1e-06 57.8 32 75.0
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-06 57.4 39 66.7
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.4e-06 57.4 61 41.0


User provided reference genes

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