Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.9e-83 312.4 152 100.0
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 7.4e-59 230.7 117 92.3
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 3.4e-56 221.9 114 89.5
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 3.4e-56 221.9 117 88.0
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 6.5e-55 217.6 114 87.7
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.2e-54 215.3 114 86.8
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.2e-54 215.3 114 85.1
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 5.5e-54 214.5 113 88.5
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 5.5e-54 214.5 116 84.5
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 5.5e-54 214.5 110 89.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 7.2e-54 214.2 114 86.0
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 7.2e-54 214.2 114 85.1
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.2e-53 213.4 114 86.0
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.6e-53 213.0 114 86.0
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.1e-53 212.6 116 84.5
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.7e-53 212.2 114 86.0
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 3.6e-53 211.8 130 76.9
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.6e-53 211.8 114 85.1
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.6e-53 211.8 114 85.1
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.6e-53 211.8 114 86.0
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.6e-53 211.8 114 85.1
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 4.6e-53 211.5 113 85.8
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 6.1e-53 211.1 116 82.8
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 7.9e-53 210.7 111 85.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 7.9e-53 210.7 126 78.6
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 7.9e-53 210.7 109 86.2
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.0e-52 210.3 114 85.1
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.0e-52 210.3 114 85.1
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.8e-52 209.5 110 87.3
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 5.1e-52 208.0 110 85.5
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.1e-52 208.0 114 84.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 6.7e-52 207.6 114 83.3
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.7e-52 207.6 114 83.3
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 8.8e-52 207.2 116 81.9
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.5e-51 206.5 110 86.4
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.0e-51 206.1 114 82.5
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.6e-51 205.7 110 85.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.4e-51 204.9 114 81.6
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 4.4e-51 204.9 110 85.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 7.4e-51 204.1 114 82.5
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 7.4e-51 204.1 114 82.5
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 7.4e-51 204.1 114 82.5
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 7.4e-51 204.1 114 82.5
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 7.4e-51 204.1 111 83.8
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.4e-51 204.1 114 82.5
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 9.7e-51 203.8 111 84.7
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 9.7e-51 203.8 117 79.5
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.3e-50 203.4 113 82.3
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.3e-50 203.4 113 82.3
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.7e-50 203.0 114 82.5
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.7e-50 203.0 110 82.7
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.7e-50 203.0 114 80.7
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.2e-50 202.6 114 81.6
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.8e-50 202.2 114 81.6
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.8e-50 202.2 114 81.6
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 2.8e-50 202.2 114 81.6
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 2.8e-50 202.2 109 84.4
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 2.8e-50 202.2 114 80.7
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 3.7e-50 201.8 110 82.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 4.8e-50 201.4 114 81.6
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.8e-50 201.4 111 82.9
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 6.3e-50 201.1 113 82.3
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 6.3e-50 201.1 109 84.4
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 6.3e-50 201.1 108 86.1
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 6.3e-50 201.1 114 80.7
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 8.2e-50 200.7 111 82.0
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-49 200.3 114 79.8
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.4e-49 199.9 137 69.3
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.8e-49 199.5 114 79.8
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.8e-49 199.5 114 79.8
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-49 199.5 114 79.8
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-49 199.5 114 79.8
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.8e-49 199.5 114 79.8
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.8e-49 199.5 111 82.0
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.4e-49 199.1 114 78.9
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.4e-49 199.1 110 82.7
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.1e-49 198.4 114 78.1
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 5.3e-49 198.0 118 78.0
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 6.9e-49 197.6 106 84.0
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.2e-48 196.8 114 77.2
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 1.2e-48 196.8 111 79.3
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.2e-48 196.8 114 79.8
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.2e-48 196.8 114 79.8
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.5e-48 196.4 114 79.8
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.0e-48 196.1 111 78.4
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.0e-48 196.1 111 78.4
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 2.6e-48 195.7 111 79.3
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 2.6e-48 195.7 114 78.1
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 3.4e-48 195.3 114 76.3
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 4.5e-48 194.9 111 79.3
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 4.5e-48 194.9 110 82.7
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.9e-48 194.5 116 78.4
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 7.7e-48 194.1 110 79.1
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.0e-47 193.7 106 83.0
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.3e-47 193.4 106 82.1
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.2e-47 192.6 114 75.4
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 6.5e-47 191.0 111 77.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 8.5e-47 190.7 111 74.8
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-45 186.8 114 76.3
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 6.1e-45 184.5 149 62.4
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.0e-44 183.7 110 74.5
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.0e-44 183.7 104 81.7
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.4e-44 183.3 108 74.1
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.4e-44 183.3 115 72.2
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 2.3e-44 182.6 105 80.0
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 2.3e-44 182.6 110 74.5
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.1e-43 180.3 96 85.4
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 3.3e-43 178.7 178 53.9
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 7.4e-43 177.6 105 74.3
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.7e-43 177.2 105 77.1
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.3e-42 176.8 114 72.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 6.3e-42 174.5 104 73.1
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 8.2e-42 174.1 103 75.7
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 8.2e-42 174.1 104 73.1
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.4e-41 173.3 96 83.3
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 2.4e-41 172.6 101 75.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 5.3e-41 171.4 102 76.5
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 7.7e-40 167.5 101 73.3
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 3.2e-38 162.2 95 80.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 9.4e-38 160.6 127 59.8
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-35 152.1 114 64.9
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 7.5e-35 151.0 111 59.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 4.8e-34 148.3 115 63.5
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.7e-31 139.8 111 55.0
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 1.7e-31 139.8 111 53.2
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 6.5e-31 137.9 114 60.5
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 6.5e-31 137.9 85 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.0e-28 130.6 106 54.7
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-27 124.8 122 45.9
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.8e-26 122.5 56 94.6
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 8.3e-26 120.9 59 84.7
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 1.6e-24 116.7 56 85.7
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.5e-23 111.3 85 65.9
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 8.5e-23 110.9 100 51.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 4.2e-22 108.6 60 76.7
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 9.5e-22 107.5 96 52.1
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.4e-20 103.6 56 78.6
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 6.8e-20 101.3 113 49.6
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 5.7e-19 98.2 83 61.4
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 2.8e-18 95.9 98 46.9
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.8e-17 93.2 55 83.6
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.8e-17 93.2 149 38.9
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 9.2e-17 90.9 55 76.4
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 1.0e-15 87.4 50 86.0
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-14 83.6 46 80.4
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 8.9e-12 74.3 61 63.9
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 4.1e-09 65.5 105 33.3
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 3.5e-08 62.4 82 48.8


User provided reference genes

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