Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 1.2e-255 885.9 448 100.0
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 9.6e-240 833.2 451 92.2
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 6.7e-233 810.4 451 90.7
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 7.6e-229 797.0 451 89.6
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 5.7e-216 754.2 449 84.9
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 6.3e-215 750.7 459 81.9
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.1e-214 750.0 455 84.2
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 4.1e-214 748.0 452 83.8
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 4.1e-214 748.0 452 82.7
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 1.5e-213 746.1 454 83.3
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 2.6e-213 745.3 457 82.3
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 2.6e-213 745.3 457 82.1
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 3.4e-213 745.0 454 83.5
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 5.9e-213 744.2 455 83.3
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 2.9e-212 741.9 457 81.8
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 3.8e-212 741.5 454 82.6
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 5.0e-212 741.1 472 79.7
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 1.1e-211 740.0 457 81.4
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.4e-211 739.6 456 82.2
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 2.5e-211 738.8 454 82.4
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 3.2e-211 738.4 455 82.4
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 7.2e-211 737.3 449 82.4
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 9.4e-211 736.9 454 82.4
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 2.1e-210 735.7 457 80.5
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.7e-210 735.3 461 81.8
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 3.6e-210 734.9 457 82.1
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 4.7e-210 734.6 457 81.8
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.7e-210 734.6 454 81.9
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 1.0e-209 733.4 453 81.7
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 1.4e-209 733.0 454 81.1
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 2.3e-209 732.3 450 82.2
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 5.1e-209 731.1 454 81.7
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.1e-208 729.9 473 79.7
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 1.1e-208 729.9 472 79.4
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 4.4e-208 728.0 452 81.4
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 1.3e-207 726.5 450 80.4
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.7e-207 726.1 456 80.0
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.7e-207 724.9 473 79.3
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 4.8e-207 724.5 449 80.8
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 1.1e-206 723.4 450 81.8
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.4e-206 723.0 453 80.1
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 2.4e-206 722.2 452 81.4
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 3.1e-206 721.8 457 79.2
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 4.1e-206 721.5 452 81.4
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 4.1e-206 721.5 452 80.5
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.2e-205 719.9 453 81.0
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 1.5e-205 719.5 457 79.0
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 2.6e-205 718.8 451 81.4
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 3.4e-205 718.4 454 81.1
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 4.5e-205 718.0 459 80.2
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 4.5e-205 718.0 431 83.3
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 1.0e-204 716.8 453 80.4
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.0e-204 716.8 431 83.5
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.4e-203 713.0 452 80.1
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 1.9e-203 712.6 451 80.5
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 4.2e-203 711.4 459 79.5
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 9.4e-203 710.3 456 78.9
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 9.4e-203 710.3 449 81.1
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 3.6e-202 708.4 459 78.2
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 1.4e-201 706.4 449 80.6
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 1.8e-201 706.1 459 79.1
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 2.3e-201 705.7 453 78.1
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 3.0e-201 705.3 450 80.0
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 5.2e-201 704.5 456 77.6
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 2.6e-200 702.2 452 80.3
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 5.7e-200 701.0 452 80.1
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 5.7e-200 701.0 518 72.8
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.3e-199 699.9 452 78.3
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.3e-199 699.9 450 78.0
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 2.2e-199 699.1 453 78.1
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 4.8e-199 698.0 385 88.1
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 1.8e-198 696.0 457 78.1
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 5.3e-198 694.5 383 88.0
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 9.1e-198 693.7 456 78.3
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 2.6e-197 692.2 449 77.3
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.0e-196 690.3 462 77.3
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 1.7e-196 689.5 456 77.2
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 2.9e-196 688.7 443 77.7
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 4.7e-194 681.4 396 83.3
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 5.2e-193 677.9 362 91.4
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 1.2e-189 666.8 458 75.8
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 2.0e-189 666.0 456 76.1
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 7.7e-189 664.1 357 90.8
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.6e-186 656.4 460 73.9
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.4e-185 653.3 454 74.9
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 2.6e-184 649.0 449 75.5
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.3e-183 646.7 459 73.9
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.2e-183 646.0 370 84.3
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.1e-182 643.7 453 75.7
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 1.6e-178 629.8 391 77.2
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.1e-174 617.1 332 90.7
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.0e-169 600.5 332 87.3
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.9e-166 589.7 401 71.8
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 5.4e-166 588.2 381 73.2
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 4.3e-163 578.6 400 70.2
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.0e-156 557.4 455 67.3
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 1.3e-156 557.0 352 81.2
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.5e-155 552.7 384 75.8
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 5.6e-155 551.6 352 79.0
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 5.2e-153 545.0 390 67.2
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.5e-152 543.5 297 89.2
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 2.9e-143 512.7 279 88.5
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 2.4e-137 493.0 404 61.9
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 1.2e-136 490.7 278 84.9
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 3.3e-131 472.6 310 79.7
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.3e-127 460.7 332 72.0
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 9.3e-126 454.5 235 93.2
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 9.3e-126 454.5 235 93.2
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.2e-125 454.1 401 62.6
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.9e-124 449.1 404 61.1
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 5.1e-124 448.7 269 81.8
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 2.6e-112 409.8 409 50.1
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 2.6e-96 356.7 243 76.1
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 2.3e-76 290.4 319 47.3
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 7.2e-62 242.3 337 41.8
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 2.4e-57 227.3 403 36.2
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 4.0e-52 209.9 351 35.0
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 6.8e-52 209.1 380 35.8
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 9.2e-49 198.7 117 82.9
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 7.8e-48 195.7 349 34.7
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 5.6e-46 189.5 102 87.3
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 4.0e-44 183.3 100 89.0
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 3.4e-43 180.3 147 67.3
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 8.3e-42 175.6 363 31.7
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 1.3e-39 168.3 96 88.5
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.7e-39 167.9 150 62.0
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 8.1e-21 105.9 51 86.3
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 1.1e-14 85.5 45 97.8
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 1.4e-12 78.6 101 50.5
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 7.1e-09 66.2 38 86.8
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.6e-08 65.1 42 78.6


User provided reference genes

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