Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006629 Sechium edule HOM05D003149 ORTHO05D003529 5.3e-116 421.0 208 100.0
Sed0006305 Sechium edule HOM05D003149 ORTHO05D003529 3.5e-67 258.8 236 62.7
ClCG09G009140 Citrullus lanatus HOM05D003149 ORTHO05D003529 3.9e-50 202.2 232 55.2
CsaV3_7G025800 Cucumis sativus L. HOM05D003149 ORTHO05D003529 4.3e-49 198.7 237 54.0
CANSAT01G1641 Cannabis sativa HOM05D003149 ORTHO05D003529 1.9e-33 146.7 235 42.1
SGA_v2.0_scaffold340G49312 Striga asiatica HOM05D003149 ORTHO05D003529 5.4e-28 128.6 234 39.3
TWI18G1429 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 6.0e-27 125.2 231 40.7
TWI36G0408 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 7.8e-27 124.8 229 39.7
Actinidia03243 Actinidia chinensis HOM05D003149 ORTHO05D003529 3.0e-26 122.9 234 38.9
MSTRG.8193 Avicennia marina HOM05D003149 ORTHO05D003529 6.6e-26 121.7 231 38.1
Rhsim05G0164400 Rhododendron simsii HOM05D003149 ORTHO05D003529 6.6e-26 121.7 223 39.9
Nn1g09739 Nelumbo nucifera HOM05D003149 ORTHO05D003529 2.5e-25 119.8 229 37.6
TPR.G31054 Trifolium pratense HOM05D003149 ORTHO05D003529 1.2e-24 117.5 226 38.5
TWI75G0623 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 1.2e-24 117.5 204 41.2
Migut.F01844 Erythranthe guttata HOM05D003149 ORTHO05D003529 2.1e-24 116.7 238 37.0
Dinv29078 Davidia involucrata HOM05D003149 ORTHO05D003529 3.6e-24 115.9 237 37.1
SGA_v2.0_scaffold122G33204 Striga asiatica HOM05D003149 ORTHO05D003529 3.6e-24 115.9 231 37.7
Psat0ss1917g0040 Pisum sativum HOM05D003149 ORTHO05D003529 6.2e-24 115.2 230 36.1
Sed0013889 Sechium edule HOM05D003149 ORTHO05D003529 6.2e-24 115.2 124 55.6
CiPaw.07G085200 Carya illinoinensis HOM05D003149 ORTHO05D003529 1.8e-23 113.6 226 38.1
Ca_08244_v3 Cicer arietinum L. HOM05D003149 ORTHO05D003529 1.5e-22 110.5 230 34.8
MELO3C012775.2 Cucumis melo HOM05D003149 ORTHO05D003529 1.5e-22 110.5 161 47.2
Gohir.A10G145300 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.6e-22 109.8 226 38.1
Gohir.D10G121700 Gossypium hirsutum HOM05D003149 ORTHO05D003529 3.4e-22 109.4 226 38.1
Gorai.011G133800 Gossypium raimondii HOM05D003149 ORTHO05D003529 3.4e-22 109.4 226 38.1
Sabra10G0138100 Salix brachista HOM05D003149 ORTHO05D003529 7.6e-22 108.2 234 35.5
Oeu001216.1 Olea europaea HOM05D003149 ORTHO05D003529 2.9e-21 106.3 233 36.9
CAN.G282.52 Capsicum annuum HOM05D003149 ORTHO05D003529 4.9e-21 105.5 225 37.8
Medtr7g084890 Medicago truncatula HOM05D003149 ORTHO05D003529 4.9e-21 105.5 221 36.7
Thecc.05G110700 Theobroma cacao HOM05D003149 ORTHO05D003529 1.1e-20 104.4 216 36.6
Potri.010G180200 Populus trichocarpa HOM05D003149 ORTHO05D003529 1.4e-20 104.0 239 34.7
Duzib106G1027 Durio zibethinus HOM05D003149 ORTHO05D003529 3.2e-20 102.8 216 37.5
Phvul.004G067600 Phaseolus vulgaris HOM05D003149 ORTHO05D003529 9.3e-20 101.3 228 32.5
Atru.chr12.1650 Acer truncatum HOM05D003149 ORTHO05D003529 1.6e-19 100.5 235 34.9
Cfa006218 Carpinus fangiana HOM05D003149 ORTHO05D003529 1.6e-19 100.5 230 34.3
VMungo0464G1154 Vigna mungo HOM05D003149 ORTHO05D003529 1.6e-19 100.5 228 32.9
Lalb_Chr14g0364251 Lupinus albus HOM05D003149 ORTHO05D003529 4.6e-19 99.0 228 33.3
Lsat_1_v5_gn_0_14541 Lactuca sativa HOM05D003149 ORTHO05D003529 7.8e-19 98.2 217 33.6
Phvul.004G067500 Phaseolus vulgaris HOM05D003149 ORTHO05D003529 3.9e-18 95.9 229 34.9
Ciclev10012589m.g Citrus clementina HOM05D003149 ORTHO05D003529 5.1e-18 95.5 225 34.2
HanXRQChr16g0511871 Helianthus annuus HOM05D003149 ORTHO05D003529 5.1e-18 95.5 218 33.9
PGSC0003DMG401016399 Solanum tuberosum HOM05D003149 ORTHO05D003529 6.6e-18 95.1 220 35.0
Lalb_Chr24g0403041 Lupinus albus HOM05D003149 ORTHO05D003529 8.7e-18 94.7 226 32.7
Sc09g0001350 Simmondsia chinensis HOM05D003149 ORTHO05D003529 1.1e-17 94.4 230 33.5
CSS0012520 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 1.9e-17 93.6 257 33.5
FAN07G0836 Fragaria x ananassa HOM05D003149 ORTHO05D003529 2.5e-17 93.2 222 35.1
Lj1g0025540 Lotus japonicus HOM05D003149 ORTHO05D003529 2.5e-17 93.2 237 33.3
Sabra17G0021200 Salix brachista HOM05D003149 ORTHO05D003529 2.5e-17 93.2 231 34.2
FvH4_4g11360 Fragaria vesca HOM05D003149 ORTHO05D003529 4.3e-17 92.4 221 35.3
TAR362G1330 Trochodendron aralioides HOM05D003149 ORTHO05D003529 4.3e-17 92.4 244 31.6
MBI11_g35029_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 7.3e-17 91.7 242 32.6
Sopen01g003730 Solanum pennellii HOM05D003149 ORTHO05D003529 9.6e-17 91.3 215 34.0
MBI08_g01803_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 2.8e-16 89.7 224 31.7
COL.COLO4_20519 Corchorus olitorius HOM05D003149 ORTHO05D003529 3.6e-16 89.4 206 37.4
Glyma.02G068400 Glycine max HOM05D003149 ORTHO05D003529 3.6e-16 89.4 226 32.7
Glyma.02G068600 Glycine max HOM05D003149 ORTHO05D003529 3.6e-16 89.4 226 32.7
Glyma.16G149900 Glycine max HOM05D003149 ORTHO05D003529 8.1e-16 88.2 228 32.0
Peaxi162Scf00563g00312 Petunia axillaris HOM05D003149 ORTHO05D003529 8.1e-16 88.2 207 34.3
FAN15G2890 Fragaria x ananassa HOM05D003149 ORTHO05D003529 2.4e-15 86.7 209 34.9
Glyma.16G149700 Glycine max HOM05D003149 ORTHO05D003529 2.4e-15 86.7 228 32.0
Duzib093G1636 Durio zibethinus HOM05D003149 ORTHO05D003529 3.1e-15 86.3 234 32.5
FvH4_2g08280 Fragaria vesca HOM05D003149 ORTHO05D003529 3.1e-15 86.3 209 34.9
FAN24G1951 Fragaria x ananassa HOM05D003149 ORTHO05D003529 6.9e-15 85.1 209 34.4
CiPaw.02G056200 Carya illinoinensis HOM05D003149 ORTHO05D003529 1.2e-14 84.3 220 32.3
HPP92_004557 Vanilla planifolia HOM05D003149 ORTHO05D003529 1.5e-14 84.0 221 32.1
arahy.Tifrunner.gnm1.ann1.U2W2LI Arachis hypogaea HOM05D003149 ORTHO05D003529 2.6e-14 83.2 242 31.8
Cfa015771 Carpinus fangiana HOM05D003149 ORTHO05D003529 2.6e-14 83.2 233 32.6
Hma1.2p1_1961F.1_g309090 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 2.6e-14 83.2 211 33.6
SEGI_35784 Sequoiadendron giganteum HOM05D003149 ORTHO05D003529 4.5e-14 82.4 225 30.7
Dinv22647 Davidia involucrata HOM05D003149 ORTHO05D003529 7.6e-14 81.6 214 33.6
unitig_699.g19736 Utricularia gibba HOM05D003149 ORTHO05D003529 7.6e-14 81.6 194 33.5
Aqoxy2G04110 Aquilegia oxysepala HOM05D003149 ORTHO05D003529 1.7e-13 80.5 239 28.0
Eucgr.H00413 Eucalyptus grandis HOM05D003149 ORTHO05D003529 1.7e-13 80.5 240 31.7
Potri.017G035200 Populus trichocarpa HOM05D003149 ORTHO05D003529 2.2e-13 80.1 233 31.8
RcHm_v2.0_Chr4g0407911 Rosa chinensis HOM05D003149 ORTHO05D003529 2.2e-13 80.1 221 32.1
arahy.Tifrunner.gnm1.ann1.V6QQET Arachis hypogaea HOM05D003149 ORTHO05D003529 2.9e-13 79.7 240 30.0
DCAR_023903 Daucus carota HOM05D003149 ORTHO05D003529 3.8e-13 79.3 240 30.0
CDE08G0700 Ceratophyllum demersum HOM05D003149 ORTHO05D003529 4.9e-13 79.0 232 28.9
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 4.9e-13 79.0 232 31.0
Thecc.05G003000 Theobroma cacao HOM05D003149 ORTHO05D003529 4.9e-13 79.0 237 30.8
Haze_04605 Corylus avellana HOM05D003149 ORTHO05D003529 6.4e-13 78.6 338 25.7
Potri.007G126300 Populus trichocarpa HOM05D003149 ORTHO05D003529 6.4e-13 78.6 228 32.9
THA.LOC104815863 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 6.4e-13 78.6 242 31.0
RcHm_v2.0_Chr6g0263161 Rosa chinensis HOM05D003149 ORTHO05D003529 1.1e-12 77.8 199 33.7
arahy.Tifrunner.gnm1.ann1.4L1T75 Arachis hypogaea HOM05D003149 ORTHO05D003529 1.4e-12 77.4 234 30.8
Cpa.g.sc71.18 Carica papaya HOM05D003149 ORTHO05D003529 1.4e-12 77.4 239 31.0
CDE02G3933 Ceratophyllum demersum HOM05D003149 ORTHO05D003529 1.4e-12 77.4 223 30.0
Lalb_Chr21g0317031 Lupinus albus HOM05D003149 ORTHO05D003529 1.4e-12 77.4 231 30.7
QL10p047472 Quercus lobata HOM05D003149 ORTHO05D003529 2.4e-12 76.6 215 29.8
AUR62030021 Chenopodium quinoa HOM05D003149 ORTHO05D003529 3.2e-12 76.3 240 27.9
Cc09_g04100 Coffea canephora HOM05D003149 ORTHO05D003529 4.2e-12 75.9 102 42.2
PGR083G1968 Punica granatum HOM05D003149 ORTHO05D003529 4.2e-12 75.9 224 32.1
MD04G1037500 Malus domestica HOM05D003149 ORTHO05D003529 7.1e-12 75.1 229 28.4
Gorai.006G186400 Gossypium raimondii HOM05D003149 ORTHO05D003529 9.3e-12 74.7 234 29.9
Sc19g0002190 Simmondsia chinensis HOM05D003149 ORTHO05D003529 1.2e-11 74.3 257 27.2
MD04G1037400 Malus domestica HOM05D003149 ORTHO05D003529 1.6e-11 73.9 196 30.1
Nitab4.5_0004301g0060 Nicotiana tabacum HOM05D003149 ORTHO05D003529 1.6e-11 73.9 75 50.7
GSVIVG01003749001 Vitis vinifera HOM05D003149 ORTHO05D003529 1.6e-11 73.9 106 38.7
GSVIVG01003753001 Vitis vinifera HOM05D003149 ORTHO05D003529 1.6e-11 73.9 106 38.7
Gohir.D09G164600 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.1e-11 73.6 234 29.9
HanXRQChr16g0517981 Helianthus annuus HOM05D003149 ORTHO05D003529 2.1e-11 73.6 191 31.4
Manes.04G040400 Manihot esculenta HOM05D003149 ORTHO05D003529 2.1e-11 73.6 252 28.6
CAN.G169.2 Capsicum annuum HOM05D003149 ORTHO05D003529 3.5e-11 72.8 69 52.2
Actinidia34620 Actinidia chinensis HOM05D003149 ORTHO05D003529 7.9e-11 71.6 214 30.8
CSS0004883 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 7.9e-11 71.6 230 31.3
Lj6A60G38 Lonicera japonica HOM05D003149 ORTHO05D003529 7.9e-11 71.6 227 30.8
Peaxi162Scf00021g00202 Petunia axillaris HOM05D003149 ORTHO05D003529 1.0e-10 71.2 73 47.9
CSS0028064 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 1.8e-10 70.5 230 30.9
THA.LOC104826191 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 1.8e-10 70.5 232 30.2
AL1G15800 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 3.0e-10 69.7 231 29.9
Gohir.A09G168900 Gossypium hirsutum HOM05D003149 ORTHO05D003529 3.0e-10 69.7 234 29.5
Nitab4.5_0000069g0240 Nicotiana tabacum HOM05D003149 ORTHO05D003529 3.0e-10 69.7 69 50.7
ATR0332G090 Amborella trichopoda HOM05D003149 ORTHO05D003529 6.7e-10 68.6 199 29.6
PGSC0003DMG402016399 Solanum tuberosum HOM05D003149 ORTHO05D003529 6.7e-10 68.6 69 47.8
Carub.0001s0522 Capsella rubella HOM05D003149 ORTHO05D003529 8.7e-10 68.2 234 29.1
PSO017G3277 Papaver somniferum HOM05D003149 ORTHO05D003529 8.7e-10 68.2 256 27.0
Ciclev10021620m.g Citrus clementina HOM05D003149 ORTHO05D003529 1.5e-09 67.4 219 29.2
Sabra07G0102400 Salix brachista HOM05D003149 ORTHO05D003529 1.5e-09 67.4 250 29.6
vmacro19582 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 1.5e-09 67.4 158 34.8
AT2G31600 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 1.9e-09 67.0 240 28.8
Hma1.2p1_0597F.1_g186520 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 1.9e-09 67.0 245 28.2
Rhsim09G0030200 Rhododendron simsii HOM05D003149 ORTHO05D003529 1.9e-09 67.0 209 29.2
AL4G26850 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 2.5e-09 66.6 242 29.3
Thhalv10017019m.g Eutrema salsugineum HOM05D003149 ORTHO05D003529 2.5e-09 66.6 236 29.7
HanXRQChr07g0186141 Helianthus annuus HOM05D003149 ORTHO05D003529 4.3e-09 65.9 227 29.5
Solyc01g008200.3 Solanum lycopersicum HOM05D003149 ORTHO05D003529 4.3e-09 65.9 69 46.4
RcHm_v2.0_Chr6g0273581 Rosa chinensis HOM05D003149 ORTHO05D003529 5.6e-09 65.5 80 45.0
Lsat_1_v5_gn_6_55141 Lactuca sativa HOM05D003149 ORTHO05D003529 9.6e-09 64.7 238 27.3
AT1G05860 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 1.3e-08 64.3 234 28.2
ECA232G0294 Erigeron canadensis HOM05D003149 ORTHO05D003529 1.3e-08 64.3 106 36.8
Carub.0004s1290 Capsella rubella HOM05D003149 ORTHO05D003529 1.6e-08 63.9 232 28.4
Atru.chr3.1569 Acer truncatum HOM05D003149 ORTHO05D003529 2.8e-08 63.2 224 29.5
Atru.chr3.1588 Acer truncatum HOM05D003149 ORTHO05D003529 2.8e-08 63.2 224 29.5
vmacro01066 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 2.8e-08 63.2 208 27.4
PSO675G5052 Papaver somniferum HOM05D003149 ORTHO05D003529 4.8e-08 62.4 259 25.9
AT3G53860 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 6.2e-08 62.0 200 31.0
AUR62002600 Chenopodium quinoa HOM05D003149 ORTHO05D003529 8.1e-08 61.6 212 27.8
DCAR_008984 Daucus carota HOM05D003149 ORTHO05D003529 8.1e-08 61.6 223 26.5
Sp1g04680 Schrenkiella parvula HOM05D003149 ORTHO05D003529 8.1e-08 61.6 245 28.2
CARHR125250 Cardamine hirsuta HOM05D003149 ORTHO05D003529 1.1e-07 61.2 216 30.1
SHI29168 Sapria himalayana HOM05D003149 ORTHO05D003529 2.4e-07 60.1 247 27.1
AL5G34840 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 3.1e-07 59.7 233 28.3
A08p36250 Brassica napus HOM05D003149 ORTHO05D003529 4.0e-07 59.3 228 28.5
A10p04560 Brassica napus HOM05D003149 ORTHO05D003529 6.9e-07 58.5 196 29.1
arahy.Tifrunner.gnm1.ann1.WZJ3TK Arachis hypogaea HOM05D003149 ORTHO05D003529 9.0e-07 58.2 109 32.1
ATR0743G205 Amborella trichopoda HOM05D003149 ORTHO05D003529 1.2e-06 57.8 212 27.8
CARHR005400 Cardamine hirsuta HOM05D003149 ORTHO05D003529 1.2e-06 57.8 234 26.5
ECA233G4617 Erigeron canadensis HOM05D003149 ORTHO05D003529 1.2e-06 57.8 135 29.6
VMungo0464G1958 Vigna mungo HOM05D003149 ORTHO05D003529 1.5e-06 57.4 138 35.5
BcaC05g24329 Brassica carinata HOM05D003149 ORTHO05D003529 7.6e-06 55.1 200 29.0
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 9.9e-06 54.7 147 32.7


User provided reference genes

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