Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 6.3e-294 1013.4 540 100.0
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 6.8e-248 860.5 547 84.5
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.2e-247 859.8 547 84.1
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 8.9e-240 833.6 552 82.1
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.0e-203 712.2 550 70.2
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 6.2e-201 704.5 543 69.6
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 8.1e-201 704.1 539 69.2
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 2.2e-198 696.0 541 68.2
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.4e-197 693.3 547 67.8
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.9e-194 682.9 549 69.0
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 2.5e-194 682.6 545 67.2
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 1.6e-193 679.9 554 67.3
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 2.8e-193 679.1 551 67.7
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 2.4e-192 676.0 541 67.3
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 5.3e-192 674.9 523 70.9
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 6.9e-192 674.5 543 67.0
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 6.9e-192 674.5 554 67.1
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.5e-191 673.3 542 66.2
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.0e-191 672.9 550 67.5
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.6e-191 672.5 551 67.5
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 7.6e-191 671.0 540 68.0
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 2.2e-190 669.5 539 67.7
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.2e-190 669.5 539 67.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 4.9e-190 668.3 541 66.4
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.1e-189 667.2 542 66.1
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.1e-189 667.2 555 65.8
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.9e-189 666.4 555 64.0
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.2e-189 665.2 538 66.9
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 7.1e-189 664.5 529 67.3
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 7.1e-189 664.5 544 67.3
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.6e-188 663.3 549 65.6
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.6e-188 663.3 493 70.8
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 3.5e-188 662.1 551 65.7
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.3e-187 659.4 547 65.1
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.9e-187 658.7 538 66.0
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 8.7e-187 657.5 556 65.8
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.1e-186 657.1 553 63.8
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.1e-186 657.1 547 65.6
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 2.5e-186 656.0 555 63.2
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 2.5e-186 656.0 564 64.9
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.3e-186 655.2 560 63.0
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.3e-186 655.2 539 67.3
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 5.6e-186 654.8 544 66.0
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 7.4e-186 654.4 561 62.4
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 7.4e-186 654.4 539 67.3
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 9.6e-186 654.1 539 67.2
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 9.6e-186 654.1 538 64.9
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 1.3e-185 653.7 534 66.5
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 2.1e-185 652.9 555 63.8
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 4.8e-185 651.7 542 66.1
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 6.2e-185 651.4 550 64.9
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.4e-184 650.2 551 65.0
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.4e-184 649.4 547 63.6
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 3.1e-184 649.0 551 64.8
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 9.0e-184 647.5 539 67.2
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.2e-183 647.1 547 64.5
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.2e-183 647.1 547 64.7
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 3.4e-183 645.6 550 64.0
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 5.8e-183 644.8 546 63.2
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 1.7e-182 643.3 550 65.3
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 1.7e-182 643.3 547 64.2
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 2.9e-182 642.5 551 63.7
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 4.9e-182 641.7 541 64.7
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 4.9e-182 641.7 545 65.0
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 6.5e-182 641.3 542 64.2
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.1e-181 640.6 588 62.1
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 5.5e-181 638.3 543 63.9
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 7.1e-181 637.9 548 64.1
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 9.3e-181 637.5 561 62.7
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.6e-180 636.7 611 59.7
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.7e-180 636.0 527 65.1
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 3.5e-180 635.6 542 64.0
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 3.5e-180 635.6 551 62.3
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 4.6e-180 635.2 540 64.4
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 4.6e-180 635.2 542 64.8
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.0e-179 634.0 568 60.9
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.0e-179 632.5 542 64.2
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 8.7e-179 630.9 582 61.2
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 2.5e-178 629.4 545 64.8
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 4.1e-176 622.1 549 63.0
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 1.5e-175 620.2 562 62.1
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 4.5e-175 618.6 565 61.8
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 7.6e-175 617.8 546 63.4
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.3e-174 617.1 556 61.9
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 3.8e-174 615.5 461 70.7
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 2.1e-172 609.8 558 61.6
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 3.6e-172 609.0 549 63.0
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 5.1e-171 605.1 545 62.0
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.5e-170 602.8 515 64.1
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.1e-168 597.4 563 60.4
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.4e-168 597.0 552 60.0
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.4e-168 597.0 488 64.5
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 3.1e-168 595.9 540 61.7
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.9e-158 562.8 417 70.7
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.8e-152 543.5 581 53.7
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.9e-142 509.6 512 58.8
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.8e-136 490.3 591 48.7
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.8e-128 463.8 396 65.4
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.0e-127 460.3 465 58.1
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.8e-126 456.1 527 52.8
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 1.7e-121 440.7 468 54.9
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 7.8e-119 431.8 467 52.7
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 2.3e-110 403.7 353 62.6
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 8.6e-110 401.7 357 63.0
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.6e-108 397.5 299 70.9
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.3e-107 393.7 299 67.6
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 3.0e-102 376.7 520 42.5
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.5e-101 374.4 386 53.4
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 2.8e-100 370.2 321 60.4
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 8.1e-100 368.6 288 68.1
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.1e-99 368.2 321 60.4
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 2.4e-99 367.1 332 61.1
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 8.9e-99 365.2 307 65.8
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 2.9e-97 360.1 307 65.1
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.5e-93 347.1 397 50.6
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.7e-89 334.3 514 39.9
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 2.3e-86 323.9 561 36.7
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 2.4e-83 313.9 509 38.5
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 4.2e-80 303.1 261 62.8
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 5.3e-75 286.2 297 58.2
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 1.9e-61 241.1 166 72.3
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 2.8e-52 210.7 265 50.6
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 6.3e-44 183.0 507 29.0
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 8.2e-44 182.6 183 56.3
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.4e-43 181.8 184 53.3
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 7.7e-34 149.4 115 68.7
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 1.3e-33 148.7 424 27.1
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 4.2e-32 143.7 356 26.4
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.3e-27 126.7 95 68.4
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.5e-24 117.9 351 26.8
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 5.5e-24 116.7 433 27.7
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.2e-23 115.5 76 73.7
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.7e-23 114.4 541 25.0
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 8.0e-23 112.8 76 73.7
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.5e-16 92.0 147 40.8
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 2.5e-16 91.3 147 42.2
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 8.9e-14 82.8 148 38.5
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 2.6e-13 81.3 518 22.6
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 4.9e-12 77.0 236 32.2
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 5.4e-11 73.6 441 22.4
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 5.6e-08 63.5 394 23.4


User provided reference genes

Program Settings