Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 5.7e-275 950.3 471 100.0
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 3.6e-245 851.3 492 86.6
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 3.0e-244 848.2 471 88.1
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.4e-241 839.3 460 90.2
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 1.0e-239 833.2 460 89.6
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 8.1e-213 743.8 460 80.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.3e-212 742.3 461 80.9
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 4.0e-212 741.5 460 80.0
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.3e-210 736.5 460 79.1
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.9e-210 735.3 460 78.5
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.4e-210 734.2 460 78.7
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.1e-209 733.4 449 80.2
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.4e-209 732.3 460 78.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.2e-209 731.9 460 79.3
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.2e-208 729.9 451 79.2
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 3.5e-208 728.4 460 78.3
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 7.8e-208 727.2 460 78.5
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 8.6e-207 723.8 461 78.1
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 2.1e-205 719.2 461 77.9
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.1e-204 716.8 448 77.7
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.4e-204 715.7 461 76.6
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.1e-204 715.3 460 77.2
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.1e-204 715.3 460 77.2
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.1e-204 715.3 460 77.2
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.9e-204 713.8 460 77.0
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 8.9e-204 713.8 460 78.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.2e-203 713.4 461 76.8
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.5e-203 713.0 460 76.7
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.5e-203 713.0 463 75.8
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 9.9e-203 710.3 461 76.8
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-202 709.5 460 75.2
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 3.8e-202 708.4 450 78.0
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 3.8e-202 708.4 445 78.2
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.4e-202 707.2 460 75.0
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 3.2e-201 705.3 461 76.1
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.1e-201 704.9 460 75.0
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 2.7e-200 702.2 460 73.5
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 6.0e-200 701.0 461 75.7
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.7e-199 699.5 449 77.1
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.7e-199 699.5 434 78.3
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.7e-199 699.5 434 78.3
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.3e-199 699.1 451 77.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 2.3e-199 699.1 428 79.4
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.3e-199 699.1 461 75.3
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 5.1e-199 698.0 462 76.0
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 6.6e-199 697.6 449 76.6
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 6.6e-199 697.6 449 76.4
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 6.6e-199 697.6 449 76.6
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.7e-199 697.2 444 76.8
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.5e-198 696.4 449 76.4
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.5e-198 696.4 434 78.1
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 3.3e-198 695.3 449 76.2
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 3.3e-198 695.3 447 78.1
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 4.3e-198 694.9 446 75.8
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 2.8e-197 692.2 452 75.4
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 4.7e-197 691.4 428 78.7
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 4.7e-197 691.4 450 76.9
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 6.2e-197 691.0 446 75.8
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 3.1e-196 688.7 464 75.6
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.0e-196 688.3 449 74.8
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.0e-195 686.0 450 76.7
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 4.4e-195 684.9 425 78.8
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 5.8e-195 684.5 427 77.3
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.7e-194 682.9 459 73.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.2e-194 682.6 425 78.1
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 2.2e-194 682.6 460 73.3
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 8.4e-194 680.6 466 73.0
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 2.4e-193 679.1 427 76.8
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.4e-193 679.1 458 72.1
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 3.2e-193 678.7 463 72.6
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 5.4e-193 677.9 452 72.6
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 5.4e-193 677.9 454 74.4
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.7e-192 675.6 461 72.9
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 2.7e-192 675.6 407 79.6
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.0e-191 672.2 462 72.5
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 7.3e-190 667.5 451 74.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 3.6e-189 665.2 474 71.1
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.1e-188 663.7 474 71.7
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.4e-188 663.3 483 69.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.4e-188 662.5 444 71.6
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 3.1e-188 662.1 461 71.6
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.0e-188 661.8 443 72.9
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 5.3e-188 661.4 448 74.6
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.2e-187 660.2 474 71.3
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.2e-187 660.2 443 72.9
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.0e-187 659.4 430 75.1
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.6e-187 659.1 432 73.1
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.3e-186 656.8 436 73.9
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.2e-186 656.0 478 70.9
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.2e-186 656.0 461 72.0
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 4.9e-186 654.8 462 72.3
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 8.4e-186 654.1 474 69.6
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.1e-185 653.7 441 72.3
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.1e-185 653.7 424 75.0
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.4e-185 653.3 428 75.2
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 3.2e-185 652.1 475 70.3
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 4.2e-185 651.7 474 69.8
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 3.0e-183 645.6 467 70.2
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.1e-183 644.8 450 72.7
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.5e-182 643.3 461 70.1
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 4.3e-182 641.7 474 69.4
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 5.6e-182 641.3 436 73.2
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.2e-181 637.9 452 69.5
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.0e-179 632.9 569 59.9
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 3.8e-178 628.6 429 70.2
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 4.2e-177 625.2 419 72.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.2e-176 623.6 450 68.0
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 7.9e-176 620.9 450 68.0
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 9.6e-174 614.0 450 67.1
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 2.8e-173 612.5 494 63.8
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.1e-172 610.5 445 67.9
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 5.3e-172 608.2 361 80.1
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.9e-170 601.7 440 68.2
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.6e-168 596.7 429 68.5
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 6.3e-165 584.7 435 66.2
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.1e-164 583.9 444 66.2
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.7e-163 577.8 438 66.9
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 8.5e-162 574.3 372 76.1
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 8.8e-159 564.3 405 67.7
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.3e-156 555.1 449 65.9
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 3.4e-155 552.4 404 65.3
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.1e-150 537.3 363 72.7
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.4e-148 530.4 398 68.6
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.8e-146 522.3 451 57.6
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.9e-143 512.3 440 60.9
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.6e-139 500.4 341 70.7
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 5.9e-139 498.4 356 69.1
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 5.5e-137 491.9 443 57.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 7.2e-137 491.5 421 59.9
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.8e-135 486.9 418 58.6
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.0e-130 471.1 416 56.5
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.6e-128 463.8 323 71.5
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.1e-124 451.1 390 59.7
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.2e-108 396.4 285 67.0
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.9e-105 387.1 332 62.0
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.1e-87 328.2 212 77.4
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-87 328.2 253 67.6
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.6e-86 323.6 236 63.6
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 7.6e-86 322.0 215 74.4
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 5.6e-81 305.8 457 41.1
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 6.6e-74 282.3 201 69.7
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.8e-64 250.4 184 68.5
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.1e-49 201.8 160 65.6
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 5.9e-46 189.5 142 65.5
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 8.5e-37 159.1 150 52.7
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.4e-36 158.3 209 45.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.8e-34 151.4 149 53.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 3.5e-22 110.5 60 90.0
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.2e-12 76.3 56 62.5


User provided reference genes

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