Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 0.0e+00 1257.7 649 100.0
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 8.3e-301 1036.6 663 82.4
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.4e-300 1035.0 663 82.2
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.3e-253 879.8 650 73.5
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.4e-252 876.3 646 73.7
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 3.8e-205 718.8 661 59.0
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.2e-203 713.8 659 58.1
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.7e-203 712.6 644 61.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.2e-201 707.2 658 59.3
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.5e-201 706.8 502 71.7
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.4e-201 705.7 526 69.4
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 4.4e-201 705.3 494 72.1
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.1e-199 700.7 695 57.7
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 9.1e-199 697.6 661 59.8
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 2.0e-198 696.4 661 57.5
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.3e-197 693.7 625 60.5
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 8.5e-197 691.0 636 59.6
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 3.2e-196 689.1 568 62.7
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.2e-196 689.1 491 70.3
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 3.6e-195 685.6 696 55.3
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 8.0e-195 684.5 567 63.3
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 8.0e-195 684.5 481 70.7
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.8e-194 683.3 482 70.5
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 2.3e-194 682.9 642 57.8
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 2.3e-194 682.9 481 70.5
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 4.0e-194 682.2 638 59.9
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 8.8e-194 681.0 491 69.7
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.2e-193 680.6 502 69.9
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 3.4e-193 679.1 491 69.9
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 4.4e-193 678.7 646 58.0
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 2.4e-191 672.9 652 57.2
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 1.2e-190 670.6 475 70.1
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 2.0e-190 669.8 648 59.1
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 3.5e-190 669.1 491 69.0
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 7.7e-190 667.9 575 61.9
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 7.7e-190 667.9 607 59.3
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 8.6e-189 664.5 642 58.6
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 8.6e-189 664.5 520 66.5
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 8.6e-189 664.5 741 52.8
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 1.9e-188 663.3 659 56.4
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 2.5e-188 662.9 493 69.4
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 7.2e-188 661.4 484 70.0
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 9.5e-188 661.0 521 65.6
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 2.1e-187 659.8 505 67.1
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 8.0e-187 657.9 638 57.2
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 8.0e-187 657.9 498 68.5
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 8.0e-187 657.9 708 53.7
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 3.0e-186 656.0 500 67.4
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.0e-186 655.6 651 55.1
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 8.9e-186 654.4 483 68.1
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 2.6e-185 652.9 539 63.1
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.8e-183 646.7 629 56.8
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 2.4e-183 646.4 483 67.3
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 9.2e-183 644.4 644 58.2
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.2e-182 644.0 483 69.6
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.0e-182 643.3 488 68.0
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 8.6e-181 637.9 598 61.0
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 1.1e-180 637.5 494 67.0
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.1e-180 637.5 490 64.9
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.5e-180 637.1 510 63.5
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.5e-180 637.1 524 62.6
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.9e-180 636.7 518 63.3
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 4.3e-180 635.6 720 52.4
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 7.3e-180 634.8 523 62.7
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 7.3e-180 634.8 510 63.3
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.2e-179 634.0 508 64.0
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 2.1e-179 633.3 495 64.4
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 2.8e-179 632.9 495 64.4
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.8e-179 632.9 493 66.3
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 3.6e-179 632.5 488 66.6
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 6.2e-179 631.7 515 62.7
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 6.2e-179 631.7 578 59.5
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 2.0e-177 626.7 502 64.9
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 5.8e-177 625.2 498 64.1
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 9.8e-177 624.4 667 52.9
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 2.2e-176 623.2 494 66.8
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.9e-175 620.2 490 63.7
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 2.4e-175 619.8 486 64.4
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 8.6e-173 611.3 484 64.7
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.9e-172 610.1 633 56.1
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 3.3e-172 609.4 510 59.8
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 2.3e-170 603.2 496 62.7
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 2.9e-168 596.3 642 52.3
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 2.4e-167 593.2 484 62.8
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.2e-167 592.8 661 53.7
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 5.4e-167 592.0 640 52.0
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 9.2e-167 591.3 484 62.4
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 9.2e-167 591.3 484 63.6
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.3e-165 587.4 547 59.4
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.7e-165 587.0 640 54.5
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 1.1e-159 567.8 588 56.3
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 2.1e-158 563.5 551 57.9
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 6.2e-155 552.0 394 72.8
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 5.8e-153 545.4 594 53.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.5e-148 530.8 393 69.2
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 5.3e-146 522.3 650 47.7
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.4e-143 514.2 491 55.2
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.7e-141 507.3 491 58.7
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 4.3e-140 502.7 513 53.0
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 9.3e-135 485.0 422 63.3
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.3e-133 481.1 509 50.3
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.9e-132 477.2 385 62.6
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 3.3e-132 476.5 559 50.4
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 5.5e-127 459.1 516 51.6
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.1e-123 447.2 492 48.6
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.2e-121 441.4 296 75.7
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.6e-118 431.0 382 59.4
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 3.0e-117 426.8 310 71.3
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 8.5e-112 408.7 553 42.9
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.4e-106 391.3 357 60.2
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 4.2e-103 379.8 482 45.4
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 8.2e-99 365.5 396 53.8
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 4.1e-98 363.2 353 53.3
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 5.5e-95 352.8 493 40.6
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 9.4e-95 352.1 338 52.4
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 6.3e-91 339.3 376 54.0
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.8e-88 330.1 317 59.6
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 9.4e-87 325.5 526 38.8
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.2e-86 325.1 270 62.2
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 1.4e-85 321.6 326 56.7
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 2.8e-83 313.9 369 50.4
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 3.7e-83 313.5 369 50.4
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 1.5e-79 301.6 195 78.5
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 2.1e-78 297.7 268 57.8
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 3.4e-76 290.4 260 60.4
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.7e-70 270.0 350 46.9
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 5.2e-69 266.5 291 48.1
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.6e-62 245.0 193 64.2
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.6e-62 245.0 193 66.8
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 7.5e-60 236.1 247 55.9
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 2.7e-57 227.6 527 31.9
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.0e-56 225.7 180 64.4
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.2e-54 216.5 268 45.1
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.5e-52 211.8 271 44.3
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 9.8e-52 209.1 247 47.4
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 3.5e-49 200.7 153 71.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 5.6e-47 193.4 147 71.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 4.4e-44 183.7 126 75.4
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 6.0e-41 173.3 159 61.6
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 2.8e-38 164.5 117 69.2
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.6e-36 156.4 241 40.2
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 8.4e-35 152.9 229 40.2
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.5e-33 147.5 167 49.7
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 6.0e-33 146.7 310 33.2
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 1.1e-31 142.5 152 54.6
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 1.9e-31 141.7 249 36.9
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 1.9e-31 141.7 124 54.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 2.9e-27 127.9 119 55.5
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 3.0e-24 117.9 255 35.3
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 8.4e-19 99.8 70 68.6
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 7.9e-17 93.2 138 41.3
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.9e-15 88.6 51 84.3
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.5e-15 88.2 67 56.7
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 3.3e-15 87.8 74 56.8
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 4.3e-15 87.4 87 54.0
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.1e-14 85.1 59 72.9
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.8e-13 82.0 86 55.8
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 7.6e-12 76.6 85 48.2
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.0e-11 76.3 70 48.6
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 2.9e-11 74.7 74 47.3
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 8.4e-11 73.2 50 62.0
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 8.4e-11 73.2 53 56.6
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 8.4e-11 73.2 83 45.8
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 1.1e-10 72.8 43 65.1
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 7.1e-10 70.1 66 45.5
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 1.6e-09 68.9 52 63.5
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 3.9e-08 64.3 54 51.9
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 3.9e-08 64.3 51 58.8
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 5.1e-08 63.9 51 56.9
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-07 62.8 83 45.8
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 4.8e-06 57.4 52 51.9


User provided reference genes

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