Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 0.0e+00 1166.8 607 100.0
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 3.4e-272 941.4 608 83.4
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 4.9e-271 937.6 608 81.9
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 1.1e-270 936.4 608 82.6
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 1.8e-164 583.6 623 56.2
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 4.7e-157 558.9 626 55.0
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 8.9e-156 554.7 626 53.0
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 2.0e-155 553.5 622 54.0
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 2.5e-150 536.6 621 51.7
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 7.3e-150 535.0 622 52.1
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 2.8e-149 533.1 644 50.5
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 1.9e-145 520.4 642 49.5
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 1.2e-144 517.7 644 50.6
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 3.5e-144 516.2 654 49.7
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 5.1e-143 512.3 652 49.4
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 8.7e-143 511.5 631 50.1
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.3e-142 509.6 651 49.9
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.1e-141 506.9 663 48.4
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 2.1e-141 506.9 642 49.7
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.6e-141 506.1 646 49.4
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 5.3e-140 502.3 656 47.7
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 4.2e-137 492.7 630 49.5
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 5.4e-137 492.3 646 47.7
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 2.1e-136 490.3 648 46.1
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 2.7e-136 490.0 612 48.7
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 2.7e-136 490.0 641 47.9
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 2.7e-136 490.0 656 46.5
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 8.7e-135 485.0 650 47.1
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 1.5e-134 484.2 651 47.3
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 2.5e-134 483.4 651 46.9
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 4.3e-134 482.6 645 48.8
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 5.6e-134 482.3 655 47.8
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 7.4e-134 481.9 648 45.8
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 9.6e-134 481.5 656 47.7
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 3.7e-133 479.6 649 45.9
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 2.4e-132 476.9 635 46.8
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 4.0e-132 476.1 642 45.3
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 9.0e-132 474.9 643 47.3
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 9.0e-132 474.9 643 47.3
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 3.4e-131 473.0 708 44.4
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 1.2e-128 464.5 657 45.5
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.0e-127 461.5 698 45.1
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 1.0e-127 461.5 638 46.1
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 1.8e-127 460.7 667 45.7
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 3.7e-125 453.0 611 46.8
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 6.2e-125 452.2 664 44.7
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 8.2e-125 451.8 650 44.3
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 6.9e-124 448.7 624 46.2
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 5.8e-123 445.7 652 44.5
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 2.2e-122 443.7 613 46.5
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 5.0e-122 442.6 626 45.2
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 8.4e-122 441.8 612 45.9
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.9e-121 440.7 613 45.0
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 1.6e-120 437.6 451 58.8
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 2.3e-119 433.7 526 49.4
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 3.9e-119 433.0 632 44.9
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.1e-118 431.4 655 44.1
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 1.9e-118 430.6 540 48.5
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 3.3e-118 429.9 623 45.3
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 5.7e-118 429.1 661 43.1
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 1.8e-116 424.1 657 43.7
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 1.5e-115 421.0 676 43.8
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 2.0e-115 420.6 660 43.5
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 2.6e-115 420.2 619 43.8
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 1.4e-113 414.5 657 42.9
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 4.6e-112 409.5 626 43.0
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 4.6e-112 409.5 657 42.6
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 1.8e-111 407.5 645 42.0
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 9.7e-110 401.7 642 41.4
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 1.7e-109 401.0 609 43.0
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 3.7e-109 399.8 581 45.6
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 4.8e-109 399.4 643 42.1
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 1.8e-108 397.5 641 41.7
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 3.1e-108 396.7 646 42.3
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 2.6e-107 393.7 669 41.3
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 2.9e-106 390.2 629 42.0
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.9e-105 387.5 621 42.4
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 3.2e-105 386.7 635 40.8
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 4.2e-105 386.3 648 41.5
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 7.2e-105 385.6 643 40.6
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 2.2e-101 374.0 341 62.5
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 1.8e-100 370.9 532 44.5
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 2.2e-98 364.0 630 39.4
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 2.2e-98 364.0 634 40.5
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 2.9e-98 363.6 649 38.8
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 4.2e-97 359.8 646 39.2
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 9.4e-97 358.6 630 38.9
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 3.0e-95 353.6 648 38.7
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 9.7e-94 348.6 715 38.3
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 8.2e-93 345.5 559 38.8
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.2e-91 341.7 662 39.0
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.9e-90 337.0 670 37.2
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 5.5e-89 332.8 656 36.9
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 5.5e-89 332.8 495 46.5
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 9.8e-86 322.0 660 37.1
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 1.8e-84 317.8 511 42.3
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 9.1e-84 315.5 643 37.0
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 9.1e-84 315.5 362 53.0
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 6.5e-82 309.3 609 36.5
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 1.4e-79 301.6 359 52.4
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 2.4e-76 290.8 606 36.1
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 2.5e-73 280.8 383 46.5
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 2.0e-70 271.2 614 35.5
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 8.6e-66 255.8 474 38.8
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 1.5e-62 245.0 228 57.9
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 6.6e-58 229.6 420 37.6
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 1.1e-55 222.2 595 31.9
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 3.1e-55 220.7 183 65.6
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 7.3e-41 172.9 259 43.6
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 1.2e-40 172.2 369 35.5
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 1.4e-39 168.7 295 39.3
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 1.2e-38 165.6 228 49.1
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 1.5e-38 165.2 579 26.8
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.4e-38 163.7 182 50.5
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 1.7e-37 161.8 688 26.2
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 5.4e-36 156.8 461 29.5
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 1.6e-35 155.2 410 34.9
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 1.6e-35 155.2 158 54.4
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 2.1e-35 154.8 358 34.6
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 2.1e-35 154.8 335 31.6
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 6.0e-35 153.3 249 36.9
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 2.3e-26 124.8 187 41.7
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 5.1e-26 123.6 125 54.4
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 2.4e-23 114.8 105 57.1
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 6.9e-23 113.2 135 48.9
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 4.5e-22 110.5 88 67.0
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 2.2e-21 108.2 171 36.3
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 7.1e-20 103.2 181 35.9
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.1e-18 97.1 77 59.7
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.7e-18 96.7 307 28.3
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 8.7e-18 96.3 162 43.8
Atru.chr11.1398 Acer truncatum HOM05D005152 ORTHO05D006162 5.6e-17 93.6 135 45.9
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 1.4e-15 89.0 232 25.9
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.5e-12 78.2 203 28.6
Aqoxy4G01955 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 5.5e-12 77.0 364 26.4
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 7.1e-12 76.6 73 53.4
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.4e-07 61.6 95 40.0
Cpa.g.c26789.1 Carica papaya HOM05D005152 ORTHO05D006162 3.1e-07 61.2 59 54.2
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 4.1e-07 60.8 123 38.2
Cpa.g.sc189.1 Carica papaya HOM05D005152 ORTHO05D006162 2.0e-06 58.5 59 54.2
PGSC0003DMG400035925 Solanum tuberosum HOM05D005152 ORTHO05D006162 7.6e-06 56.6 89 39.3
MD03G1167100 Malus domestica HOM05D005152 ORTHO05D006162 1.0e-05 56.2 85 47.1


User provided reference genes

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