Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 0.0e+00 1957.6 1042 100.0
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.3e-308 1062.4 1127 58.1
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 3.9e-308 1061.6 1159 57.3
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 3.3e-307 1058.5 1169 57.4
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.1e-285 986.1 1237 52.5
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.5e-49 202.6 1261 26.7
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.9e-49 202.2 1327 25.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 2.4e-44 185.3 1359 26.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.1e-43 182.2 1185 25.7
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 5.3e-39 167.5 1219 26.2
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 7.9e-35 153.7 1172 25.3
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 3.9e-34 151.4 1126 25.0
Cfa009271 Carpinus fangiana HOM05D005863 ORTHO05D003355 1.8e-31 142.5 894 28.1
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 2.6e-30 138.7 1177 24.0
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.2e-28 131.7 1444 23.8
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 7.1e-28 130.6 1147 23.9
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 1.6e-27 129.4 157 44.6
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.6e-27 129.4 1160 24.4
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 2.7e-27 128.6 1175 24.7
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.8e-26 125.9 330 33.0
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.3e-26 125.6 1150 24.3
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.3e-26 125.6 173 42.8
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.9e-26 124.8 330 33.3
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 4.3e-25 121.3 118 52.5
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.3e-25 121.3 107 55.1
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 8.2e-24 117.1 1169 24.6
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.4e-23 116.3 1154 25.0
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.4e-23 116.3 88 58.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 5.3e-23 114.4 95 55.8
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.2e-22 113.2 1180 23.5
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.6e-22 112.1 118 49.2
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 7.7e-22 110.5 1166 24.4
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.1e-20 106.7 1302 23.1
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.2e-19 103.2 99 53.5
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.1e-19 102.4 94 50.0
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 6.1e-19 100.9 1109 22.8
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.3e-18 99.0 1160 22.8
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.0e-18 98.6 87 54.0
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 3.9e-18 98.2 99 49.5
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.1e-17 96.7 1149 23.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 2.0e-17 95.9 82 53.7
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.0e-17 95.9 82 53.7
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 2.5e-17 95.5 1300 23.1
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.5e-17 95.5 82 52.4
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.5e-17 95.5 91 48.4
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.3e-17 95.1 87 52.9
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 4.3e-17 94.7 237 29.5
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 4.3e-17 94.7 1186 24.6
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.7e-17 94.4 339 28.3
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 7.4e-17 94.0 181 34.3
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 7.4e-17 94.0 1239 22.8
Eucgr.B03235 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.7e-16 92.8 588 26.7
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 4.8e-16 91.3 162 35.8
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 6.3e-16 90.9 474 23.8
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.2e-16 90.5 1298 22.5
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.4e-15 89.7 1053 22.9
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.4e-15 89.7 177 31.6
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.4e-15 89.7 85 48.2
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.4e-15 89.0 98 44.9
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 4.1e-15 88.2 231 32.0
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 6.9e-15 87.4 1181 23.1
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 6.9e-15 87.4 92 48.9
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 1.2e-14 86.7 96 44.8
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.5e-14 86.3 80 50.0
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.0e-14 85.9 80 50.0
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 2.6e-14 85.5 121 40.5
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.4e-14 85.1 91 44.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 4.5e-14 84.7 679 23.6
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 5.9e-14 84.3 92 45.7
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 5.9e-14 84.3 92 45.7
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 5.9e-14 84.3 92 45.7
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 5.9e-14 84.3 148 37.8
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 7.7e-14 84.0 1257 21.2
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.3e-13 83.2 77 51.9
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.7e-13 82.8 1169 22.6
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.7e-13 82.8 89 47.2
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.2e-13 82.4 99 41.4
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 2.9e-13 82.0 1171 22.9
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.8e-13 81.6 119 37.0
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 6.5e-13 80.9 272 32.4
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 8.5e-13 80.5 86 45.3
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-12 80.1 85 44.7
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.1e-12 80.1 658 24.5
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.4e-12 79.7 80 50.0
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 2.5e-12 79.0 1201 23.6
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 2.5e-12 79.0 85 43.5
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.5e-12 79.0 81 48.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 3.2e-12 78.6 185 28.6
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.2e-12 78.6 77 49.4
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.2e-12 78.6 80 50.0
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.2e-12 78.6 80 50.0
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 4.2e-12 78.2 56 58.9
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 4.2e-12 78.2 81 48.1
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.2e-12 78.2 91 46.2
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 4.2e-12 78.2 108 36.1
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.5e-12 77.8 104 36.5
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 5.5e-12 77.8 97 44.3
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.2e-12 77.4 288 27.4
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 9.4e-12 77.0 97 41.2
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 9.4e-12 77.0 1059 23.8
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 9.4e-12 77.0 123 39.8
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.2e-11 76.6 81 44.4
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.2e-11 76.6 100 42.0
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 1.6e-11 76.3 355 26.5
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.6e-11 76.3 88 46.6
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 2.1e-11 75.9 236 27.1
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.7e-11 75.5 128 39.8
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 2.7e-11 75.5 78 47.4
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 2.7e-11 75.5 78 47.4
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.7e-11 75.5 85 48.2
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.7e-11 75.5 85 48.2
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 2.7e-11 75.5 77 45.5
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.6e-11 75.1 81 40.7
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 3.6e-11 75.1 84 41.7
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.7e-11 74.7 86 46.5
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 6.1e-11 74.3 97 40.2
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 6.1e-11 74.3 84 47.6
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.9e-11 73.9 86 45.3
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 7.9e-11 73.9 82 50.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 7.9e-11 73.9 1094 22.8
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 7.9e-11 73.9 88 39.8
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 7.9e-11 73.9 127 33.1
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 1.4e-10 73.2 56 55.4
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.4e-10 73.2 83 42.2
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.4e-10 73.2 84 46.4
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.8e-10 72.8 83 47.0
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.8e-10 72.8 85 47.1
arahy.Tifrunner.gnm1.ann1.Q7CAJS Arachis hypogaea HOM05D015529 ORTHO05D015409 2.3e-10 72.4 236 30.1
arahy.Tifrunner.gnm1.ann1.ZHX2UW Arachis hypogaea HOM05D015529 ORTHO05D015409 2.3e-10 72.4 236 30.1
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 3.0e-10 72.0 80 42.5
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.9e-10 71.6 80 45.0
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 3.9e-10 71.6 95 41.1
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 5.1e-10 71.2 132 31.1
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 6.7e-10 70.9 170 30.0
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 6.7e-10 70.9 84 41.7
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.7e-10 70.9 109 38.5
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 6.7e-10 70.9 72 47.2
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 6.7e-10 70.9 72 47.2
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 8.8e-10 70.5 94 40.4
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 8.8e-10 70.5 1139 21.6
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.1e-09 70.1 85 47.1
Cpa.g.sc369.5 Carica papaya HOM05D005863 ORTHO05D003355 1.5e-09 69.7 66 59.1
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 2.0e-09 69.3 77 46.8
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 2.0e-09 69.3 180 27.8
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 2.6e-09 68.9 99 37.4
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.6e-09 68.9 81 40.7
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.6e-09 68.9 73 46.6
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 5.7e-09 67.8 80 40.0
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 5.7e-09 67.8 156 29.5
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 7.4e-09 67.4 95 32.6
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 9.7e-09 67.0 81 43.2
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 1.3e-08 66.6 318 25.8
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 2.2e-08 65.9 319 24.8
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.2e-08 65.9 1049 22.0
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 3.7e-08 65.1 81 39.5
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 4.8e-08 64.7 92 42.4
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.3e-08 64.3 94 38.3
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 6.3e-08 64.3 80 42.5
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 1.1e-07 63.5 178 24.7
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.1e-07 63.5 555 24.5
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 1.1e-07 63.5 85 37.6
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.8e-07 62.8 80 40.0
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 1.8e-07 62.8 187 27.8
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.8e-07 62.8 1129 20.9
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 2.4e-07 62.4 86 37.2
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 4.1e-07 61.6 89 39.3
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 4.1e-07 61.6 85 40.0
Lalb_Chr11g0075591 Lupinus albus HOM05D013281 ORTHO05D015409 5.3e-07 61.2 556 25.2
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 1.2e-06 60.1 86 37.2
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.2e-06 60.1 80 40.0
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 1.2e-06 60.1 87 34.5
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 1.5e-06 59.7 84 35.7
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 2.0e-06 59.3 95 35.8
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 2.0e-06 59.3 56 48.2
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 2.6e-06 58.9 1238 21.2
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 3.5e-06 58.5 535 21.5
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 3.5e-06 58.5 1060 21.8
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 7.7e-06 57.4 92 41.3
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 7.7e-06 57.4 65 44.6


User provided reference genes

Program Settings