Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 9.8e-53 209.9 110 100.0
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 3.4e-29 131.7 93 81.7
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 5.8e-29 131.0 90 82.2
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 5.8e-29 131.0 90 82.2
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 4.1e-27 124.8 113 68.1
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 8.1e-23 110.5 93 66.7
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 8.1e-23 110.5 82 70.7
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 2.4e-22 109.0 90 65.6
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 8.9e-22 107.1 99 58.6
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 1.2e-21 106.7 102 57.8
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 3.4e-21 105.1 81 66.7
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 3.4e-21 105.1 81 67.9
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 3.4e-21 105.1 101 57.4
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 3.4e-21 105.1 93 61.3
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 5.8e-21 104.4 101 56.4
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 7.6e-21 104.0 91 63.7
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 1.3e-20 103.2 88 62.5
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 1.3e-20 103.2 104 57.7
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 1.7e-20 102.8 81 66.7
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 1.7e-20 102.8 81 66.7
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 2.2e-20 102.4 93 60.2
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 2.2e-20 102.4 101 54.5
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 3.8e-20 101.7 87 62.1
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 3.8e-20 101.7 82 63.4
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 3.8e-20 101.7 81 64.2
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 6.4e-20 100.9 95 61.1
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 6.4e-20 100.9 90 61.1
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 8.4e-20 100.5 103 59.2
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 8.4e-20 100.5 93 63.4
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 1.4e-19 99.8 88 60.2
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 2.4e-19 99.0 81 64.2
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 2.4e-19 99.0 76 68.4
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 3.2e-19 98.6 91 60.4
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 4.1e-19 98.2 81 61.7
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 4.1e-19 98.2 81 61.7
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 7.1e-19 97.4 93 58.1
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 7.1e-19 97.4 92 60.9
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 9.2e-19 97.1 81 64.2
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 1.2e-18 96.7 81 60.5
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 1.6e-18 96.3 87 65.5
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 1.6e-18 96.3 87 65.5
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 1.6e-18 96.3 91 60.4
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 2.1e-18 95.9 91 59.3
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 2.7e-18 95.5 81 60.5
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 3.5e-18 95.1 95 55.8
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 3.5e-18 95.1 87 64.4
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 3.5e-18 95.1 87 64.4
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 3.5e-18 95.1 87 64.4
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 3.5e-18 95.1 76 63.2
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 4.6e-18 94.7 95 55.8
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 4.6e-18 94.7 95 55.8
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 4.6e-18 94.7 98 55.1
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 6.0e-18 94.4 88 61.4
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 7.8e-18 94.0 89 62.9
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 7.8e-18 94.0 74 66.2
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 1.0e-17 93.6 81 61.7
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.0e-17 93.6 95 56.8
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 1.7e-17 92.8 87 62.1
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 1.7e-17 92.8 89 61.8
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 2.3e-17 92.4 88 58.0
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 3.0e-17 92.0 74 66.2
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 3.9e-17 91.7 88 56.8
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 6.6e-17 90.9 87 57.5
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 8.7e-17 90.5 77 59.7
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 8.7e-17 90.5 81 60.5
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 8.7e-17 90.5 89 60.7
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.5e-16 89.7 90 60.0
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.9e-16 89.4 98 53.1
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 4.3e-16 88.2 92 52.2
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 5.6e-16 87.8 89 59.6
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 7.3e-16 87.4 89 56.2
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 7.3e-16 87.4 89 56.2
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 1.6e-15 86.3 89 59.6
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.1e-15 85.9 93 57.0
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 2.1e-15 85.9 93 54.8
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 2.8e-15 85.5 81 54.3
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.8e-15 85.5 101 54.5
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 2.8e-15 85.5 122 45.9
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 6.2e-15 84.3 98 54.1
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 6.2e-15 84.3 93 55.9
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 8.1e-15 84.0 76 56.6
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 1.1e-14 83.6 83 55.4
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 1.4e-14 83.2 89 57.3
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 5.2e-14 81.3 83 56.6
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 6.9e-14 80.9 87 51.7
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 9.0e-14 80.5 60 70.0
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 2.6e-13 79.0 114 44.7
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 2.2e-12 75.9 112 42.0
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 6.4e-12 74.3 135 40.0
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 6.4e-12 74.3 72 54.2
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 2.7e-10 68.9 79 55.7
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 7.8e-10 67.4 57 61.4
Sed0003750 Sechium edule HOM05D006869 ORTHO05D008641 7.8e-10 67.4 52 73.1
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.9e-08 62.8 53 56.6
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 3.3e-08 62.0 49 59.2
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 3.3e-08 62.0 45 64.4
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 3.3e-08 62.0 84 42.9
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 5.6e-08 61.2 49 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 7.3e-08 60.8 104 36.5
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 7.3e-08 60.8 46 63.0
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 1.6e-07 59.7 49 57.1
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 2.8e-07 58.9 50 56.0
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 2.8e-07 58.9 51 56.9
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 1.1e-06 57.0 40 67.5
BcaC05g27873 Brassica carinata HOM05D006869 ORTHO05D008641 1.4e-06 56.6 86 46.5
C05p38760 Brassica napus HOM05D006869 ORTHO05D008641 1.4e-06 56.6 86 46.5
Zm00001eb390630 Zea mays HOM05D006869 ORTHO05D008641 2.4e-06 55.8 52 59.6
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 3.1e-06 55.5 50 58.0
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 3.1e-06 55.5 47 55.3


User provided reference genes

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