Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 9.9e-121 438.0 213 100.0
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 3.5e-81 306.6 216 73.1
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 1.8e-77 294.3 217 70.0
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 4.0e-69 266.5 216 66.2
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 4.8e-67 259.6 220 63.2
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 9.5e-63 245.4 165 69.7
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.6e-62 244.6 212 61.3
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 1.8e-61 241.1 213 57.7
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 2.3e-61 240.7 214 60.3
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 6.8e-61 239.2 214 58.4
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 8.9e-61 238.8 218 59.6
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 8.9e-61 238.8 203 60.6
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 1.3e-59 235.0 221 57.0
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 3.7e-59 233.4 220 58.2
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 8.3e-59 232.3 216 56.9
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.2e-57 228.4 172 64.0
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 1.6e-57 228.0 201 57.7
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 4.5e-57 226.5 172 63.4
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 5.9e-57 226.1 211 56.4
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 7.8e-57 225.7 223 54.7
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 7.8e-57 225.7 220 55.9
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 1.3e-56 224.9 165 64.8
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.9e-56 223.8 211 58.3
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 5.0e-56 223.0 216 56.9
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.9e-55 221.1 174 59.8
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 3.3e-55 220.3 224 55.8
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 4.3e-55 219.9 214 55.1
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.6e-54 218.0 187 56.7
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 2.1e-54 217.6 208 53.8
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 2.8e-54 217.2 212 55.2
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 2.8e-54 217.2 215 53.5
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 3.6e-54 216.9 216 55.1
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 3.6e-54 216.9 213 53.1
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 8.0e-54 215.7 200 53.0
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.0e-53 215.3 175 57.7
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 1.4e-53 214.9 171 59.1
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 4.0e-53 213.4 206 52.4
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 2.0e-52 211.1 166 59.6
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 2.6e-52 210.7 217 51.6
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 2.6e-52 210.7 175 56.6
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.6e-52 210.7 214 50.9
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 3.4e-52 210.3 175 57.1
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 3.4e-52 210.3 175 57.1
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 4.4e-52 209.9 213 53.5
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 9.8e-52 208.8 175 56.6
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 9.8e-52 208.8 218 52.3
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 1.7e-51 208.0 213 51.6
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.7e-51 208.0 224 51.8
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 2.2e-51 207.6 212 52.4
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 6.4e-51 206.1 210 50.5
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.1e-50 205.3 161 58.4
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 1.4e-50 204.9 211 51.2
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 1.4e-50 204.9 205 55.6
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 3.2e-50 203.8 192 57.8
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 7.0e-50 202.6 206 50.0
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 7.8e-49 199.1 170 57.1
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.3e-48 197.6 206 51.0
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 2.3e-48 197.6 181 54.1
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 3.0e-48 197.2 210 50.5
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 3.0e-48 197.2 208 49.0
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 6.6e-48 196.1 209 49.3
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 6.6e-48 196.1 209 49.3
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 8.6e-48 195.7 212 49.1
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 1.9e-47 194.5 209 48.8
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.9e-47 194.5 209 51.7
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 9.5e-47 192.2 218 48.2
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 3.6e-46 190.3 209 47.8
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 3.6e-46 190.3 209 47.8
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 3.6e-46 190.3 211 47.9
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 6.2e-46 189.5 216 49.1
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.4e-45 188.3 207 48.3
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 1.8e-45 188.0 176 54.0
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 2.3e-45 187.6 198 49.0
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 3.1e-45 187.2 148 58.1
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 8.9e-45 185.7 181 49.7
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 1.5e-44 184.9 206 48.1
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.4e-44 183.3 203 52.7
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 7.5e-44 182.6 208 46.6
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 7.5e-44 182.6 164 54.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 9.8e-44 182.2 194 48.5
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 8.3e-43 179.1 161 57.1
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 5.4e-42 176.4 189 52.9
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 7.0e-42 176.0 209 46.9
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 9.2e-42 175.6 211 45.0
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 3.5e-41 173.7 212 46.2
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.0e-40 172.2 213 44.6
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 9.5e-39 165.6 179 48.0
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 5.2e-37 159.8 199 44.2
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 6.4e-35 152.9 171 42.7
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 6.4e-35 152.9 171 42.7
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.4e-34 151.0 107 70.1
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 2.1e-33 147.9 195 41.5
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.0e-32 145.6 199 43.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.7e-32 144.8 115 57.4
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 3.0e-32 144.1 107 66.4
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 1.5e-31 141.7 107 61.7
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 3.6e-30 137.1 101 66.3
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.1e-29 135.6 107 61.7
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.7e-25 120.9 224 40.6
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 7.8e-25 119.4 86 60.5
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 3.9e-24 117.1 107 53.3
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.1e-07 62.4 43 69.8
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.1e-07 62.4 43 69.8
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 2.5e-07 61.2 52 51.9
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 7.4e-07 59.7 43 67.4
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 1.3e-06 58.9 108 31.5
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 8.1e-06 56.2 137 27.0


User provided reference genes

Program Settings