Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 5.4e-156 554.3 283 100.0
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 1.9e-140 502.7 295 89.8
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 1.4e-132 476.5 296 85.8
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.8e-119 433.0 293 75.4
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-115 419.9 297 74.7
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-115 419.9 297 74.7
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 4.7e-115 418.3 295 72.2
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.3e-114 416.0 293 73.4
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.3e-114 416.0 293 73.4
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 6.3e-112 407.9 293 71.7
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 3.1e-111 405.6 297 71.7
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.2e-107 393.7 296 70.3
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 6.1e-107 391.3 297 69.0
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 6.1e-107 391.3 297 69.0
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-106 390.2 293 70.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-106 390.2 293 70.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-106 390.2 293 70.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-106 390.2 293 70.0
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 3.0e-106 389.0 297 69.4
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.0e-106 389.0 285 73.0
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-106 388.7 295 68.8
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-106 388.7 295 68.8
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-106 388.7 295 68.8
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-106 388.7 295 68.8
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 2.0e-105 386.3 293 69.3
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 5.9e-102 374.8 302 65.6
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 1.7e-101 373.2 302 65.2
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 1.7e-101 373.2 302 65.2
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 2.9e-101 372.5 303 65.3
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 3.8e-101 372.1 300 65.3
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 6.5e-101 371.3 302 65.6
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.1e-100 370.5 270 72.6
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 1.5e-100 370.2 293 66.9
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 2.7e-99 365.9 301 64.5
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.0e-99 364.4 297 66.3
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 8.8e-98 360.9 291 66.3
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-96 356.3 251 73.3
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 2.8e-96 355.9 305 64.3
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 4.1e-95 352.1 295 64.1
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 3.8e-93 345.5 269 68.0
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-88 328.6 283 62.9
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.0e-77 294.3 260 63.5
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 8.9e-74 281.2 293 54.3
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 4.1e-71 272.3 296 53.0
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 2.1e-70 270.0 220 66.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 7.8e-70 268.1 188 70.7
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.5e-68 263.8 217 63.1
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 9.5e-68 261.2 249 57.0
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 2.3e-66 256.5 249 55.0
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 7.1e-63 245.0 146 80.8
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.3e-60 236.1 251 54.2
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.1e-58 231.1 250 51.2
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.1e-58 231.1 250 51.2
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.1e-58 231.1 250 51.2
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.1e-58 231.1 250 51.2
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.1e-58 231.1 250 51.2
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 5.2e-58 228.8 198 66.2
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 8.9e-58 228.0 156 71.2
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 8.9e-58 228.0 156 71.2
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 8.9e-58 228.0 156 71.2
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 2.4e-55 219.9 182 63.7
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.2e-55 219.5 178 68.5
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 5.4e-55 218.8 152 70.4
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-51 207.6 208 57.7
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.4e-50 204.1 298 41.6
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 6.9e-50 201.8 147 74.8
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 9.0e-50 201.4 256 46.1
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 9.0e-50 201.4 174 63.2
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 3.8e-48 196.1 121 76.9
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-47 193.7 142 69.0
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 3.9e-45 186.0 184 58.7
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 1.5e-44 184.1 178 59.6
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 9.0e-42 174.9 176 58.5
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 5.8e-41 172.2 162 61.1
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.4e-39 167.5 148 58.8
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 7.9e-38 161.8 114 68.4
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.9e-37 159.5 81 87.7
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 1.1e-36 157.9 106 67.9
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 2.1e-35 153.7 262 36.3
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-34 151.4 113 70.8
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 2.4e-34 150.2 238 44.5
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 3.1e-34 149.8 152 55.9
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.0e-33 147.1 80 83.8
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 2.0e-33 147.1 98 79.6
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 4.5e-33 146.0 129 61.2
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 7.6e-33 145.2 82 80.5
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 9.9e-33 144.8 87 86.2
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.2e-32 143.7 83 74.7
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 3.8e-32 142.9 128 62.5
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.8e-32 142.9 146 55.5
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 8.4e-32 141.7 277 32.9
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-31 141.4 80 81.2
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.2e-31 139.8 82 76.8
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.3e-31 138.3 99 66.7
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 6.0e-30 135.6 99 65.7
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.0e-29 134.8 206 41.7
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.8e-29 134.0 70 82.9
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.0e-29 133.3 206 41.3
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.9e-29 132.9 250 38.0
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.9e-29 132.9 67 88.1
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.9e-29 132.9 67 88.1
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 8.7e-29 131.7 70 82.9
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.5e-28 130.2 156 49.4
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 8.2e-27 125.2 248 39.5
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 1.5e-25 120.9 98 66.3
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.4e-25 119.8 172 48.3
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.3e-24 117.9 67 79.1
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.2e-22 111.3 53 86.8
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 2.1e-22 110.5 98 62.2
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.8e-21 107.5 53 84.9
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 1.1e-20 104.8 65 84.6
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-20 104.4 89 61.8
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 4.3e-20 102.8 91 60.4
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 4.8e-19 99.4 50 80.0
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.4e-18 97.8 50 82.0
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 2.0e-17 94.0 57 68.4
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 2.0e-17 94.0 45 86.7
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.8e-16 89.7 56 80.4
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.4e-15 87.8 69 58.0
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.2e-15 85.5 94 58.5
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-13 80.1 55 72.7
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.5e-12 77.0 65 63.1
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.7e-12 75.9 50 76.0
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 9.7e-12 75.1 58 63.8
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-11 74.7 39 79.5
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 5.3e-10 69.3 37 78.4
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.0e-09 67.4 44 70.5
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.6e-09 67.0 48 72.9
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 1.0e-08 65.1 42 76.2
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-08 63.9 66 56.1


User provided reference genes

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