Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 3.2e-50 201.4 101 100.0
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 2.3e-32 142.1 103 75.7
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.1e-31 139.8 103 74.8
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 7.4e-31 137.1 103 72.8
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 8.2e-14 80.5 107 51.4
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 8.2e-14 80.5 102 47.1
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 3.5e-12 75.1 110 44.5
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 4.5e-12 74.7 99 47.5
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 5.9e-12 74.3 101 47.5
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 7.7e-12 73.9 92 42.4
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 7.7e-12 73.9 93 43.0
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.7e-11 72.8 93 46.2
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.2e-11 72.4 101 45.5
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.9e-11 72.0 97 46.4
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 3.8e-11 71.6 98 48.0
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.5e-10 69.7 98 42.9
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 2.5e-10 68.9 96 45.8
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.2e-10 68.2 108 48.1
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.2e-10 68.2 92 44.6
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.2e-10 68.2 92 44.6
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 4.2e-10 68.2 83 50.6
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 5.5e-10 67.8 92 45.7
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 5.5e-10 67.8 99 41.4
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 5.5e-10 67.8 101 44.6
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 5.5e-10 67.8 89 44.9
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 7.2e-10 67.4 96 43.8
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 9.4e-10 67.0 99 40.4
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 9.4e-10 67.0 108 47.2
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.4e-10 67.0 108 48.1
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.4e-10 67.0 108 47.2
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.4e-10 67.0 92 43.5
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 9.4e-10 67.0 83 48.2
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 9.4e-10 67.0 108 47.2
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.2e-09 66.6 79 49.4
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 2.1e-09 65.9 61 55.7
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.1e-09 65.9 68 52.9
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 2.7e-09 65.5 98 41.8
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.7e-09 65.5 69 56.5
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 2.7e-09 65.5 111 40.5
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.7e-09 65.5 68 51.5
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 2.7e-09 65.5 73 50.7
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 3.6e-09 65.1 61 54.1
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.7e-09 64.7 68 50.0
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.7e-09 64.7 92 44.6
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 6.1e-09 64.3 97 42.3
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.1e-09 64.3 68 50.0
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 6.1e-09 64.3 77 48.1
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 8.0e-09 63.9 89 43.8
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 8.0e-09 63.9 64 56.2
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 8.0e-09 63.9 102 42.2
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 1.0e-08 63.5 106 39.6
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 1.0e-08 63.5 68 51.5
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.0e-08 63.5 62 51.6
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.4e-08 63.2 70 47.1
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.4e-08 63.2 108 41.7
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.4e-08 63.2 67 50.7
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.4e-08 63.2 89 43.8
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.4e-08 63.2 89 43.8
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.4e-08 63.2 89 43.8
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.8e-08 62.8 67 50.7
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 1.8e-08 62.8 102 43.1
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 2.3e-08 62.4 73 52.1
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.3e-08 62.4 106 39.6
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.0e-08 62.0 71 50.7
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 3.0e-08 62.0 96 43.8
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 3.0e-08 62.0 98 39.8
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 3.0e-08 62.0 98 41.8
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.0e-08 61.6 102 40.2
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 4.0e-08 61.6 60 53.3
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 5.2e-08 61.2 103 41.7
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 5.2e-08 61.2 110 43.6
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 5.2e-08 61.2 61 50.8
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 5.2e-08 61.2 101 42.6
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 6.7e-08 60.8 88 42.0
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 6.7e-08 60.8 95 42.1
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 6.7e-08 60.8 69 43.5
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.7e-08 60.8 107 39.3
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 6.7e-08 60.8 94 40.4
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 8.8e-08 60.5 92 42.4
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 8.8e-08 60.5 75 45.3
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 8.8e-08 60.5 62 50.0
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.1e-07 60.1 68 51.5
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.1e-07 60.1 97 43.3
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.1e-07 60.1 95 41.1
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 1.5e-07 59.7 108 41.7
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.5e-07 59.7 108 41.7
Lalb_Chr04g0262721 Lupinus albus HOM05D003277 ORTHO05D003275 1.5e-07 59.7 59 49.2
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.5e-07 59.7 75 48.0
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 1.5e-07 59.7 81 44.4
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 1.5e-07 59.7 81 44.4
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 1.5e-07 59.7 103 41.7
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 1.5e-07 59.7 84 47.6
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.5e-07 59.7 103 40.8
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 1.5e-07 59.7 62 51.6
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 1.5e-07 59.7 80 43.8
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.0e-07 59.3 100 41.0
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 2.0e-07 59.3 100 41.0
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 2.0e-07 59.3 60 46.7
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 2.6e-07 58.9 110 40.0
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 2.6e-07 58.9 96 40.6
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 2.6e-07 58.9 98 38.8
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 2.6e-07 58.9 62 53.2
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 3.3e-07 58.5 75 44.0
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.3e-07 58.5 90 42.2
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 3.3e-07 58.5 70 41.4
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 3.3e-07 58.5 93 41.9
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 4.4e-07 58.2 61 50.8
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 4.4e-07 58.2 107 38.3
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 4.4e-07 58.2 61 49.2
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 4.4e-07 58.2 96 44.8
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 4.4e-07 58.2 96 44.8
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 4.4e-07 58.2 62 56.5
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 4.4e-07 58.2 86 44.2
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.7e-07 57.8 107 39.3
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 5.7e-07 57.8 70 40.0
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 5.7e-07 57.8 60 48.3
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 5.7e-07 57.8 59 47.5
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 5.7e-07 57.8 88 42.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.5e-07 57.4 82 42.7
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 7.5e-07 57.4 94 38.3
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 7.5e-07 57.4 95 41.1
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 7.5e-07 57.4 97 36.1
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.5e-07 57.4 107 39.3
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.5e-07 57.4 95 40.0
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 9.7e-07 57.0 95 43.2
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 9.7e-07 57.0 79 45.6
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 1.3e-06 56.6 94 41.5
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.3e-06 56.6 62 50.0
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.3e-06 56.6 69 40.6
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.7e-06 56.2 101 39.6
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 1.7e-06 56.2 68 41.2
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 2.2e-06 55.8 68 51.5
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 2.2e-06 55.8 101 39.6
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.8e-06 55.5 61 49.2
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.8e-06 55.5 95 43.2
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.7e-06 55.1 61 47.5
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 3.7e-06 55.1 65 46.2
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 3.7e-06 55.1 74 44.6
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 4.8e-06 54.7 68 47.1
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 6.3e-06 54.3 56 46.4
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 6.3e-06 54.3 89 41.6
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 6.3e-06 54.3 109 34.9
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 6.3e-06 54.3 77 45.5
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 6.3e-06 54.3 93 38.7
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.3e-06 54.3 61 47.5
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 6.3e-06 54.3 93 41.9
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 6.3e-06 54.3 56 50.0
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 6.3e-06 54.3 57 49.1
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 6.3e-06 54.3 66 50.0
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 6.3e-06 54.3 101 38.6
Medtr4g012490 Medicago truncatula HOM05D003277 ORTHO05D003275 8.2e-06 53.9 69 44.9
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 8.2e-06 53.9 75 49.3
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 8.2e-06 53.9 75 46.7
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 8.2e-06 53.9 100 40.0


User provided reference genes

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