Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.9e-292 1008.4 521 100.0
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.7e-200 703.0 471 79.4
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 8.7e-192 674.1 471 76.0
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-185 653.7 467 74.1
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.6e-185 651.7 472 73.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.4e-156 555.8 469 63.8
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 5.0e-155 552.0 475 64.2
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.1e-152 542.0 477 62.7
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 2.8e-150 536.2 472 63.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.1e-149 532.7 475 61.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 7.0e-149 531.6 470 62.1
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.5e-146 523.1 472 61.7
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 5.5e-146 521.9 477 61.0
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.7e-145 519.6 476 60.5
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 4.7e-145 518.8 476 60.7
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.2e-144 515.4 473 60.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 5.2e-144 515.4 478 60.7
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.0e-143 513.5 472 61.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.4e-143 512.3 476 61.6
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 6.3e-142 508.4 472 60.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 9.1e-141 504.6 480 60.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.6e-140 503.8 469 59.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.6e-140 503.1 473 59.4
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 3.5e-140 502.7 483 58.0
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.7e-140 501.5 463 59.6
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.3e-139 500.7 473 59.8
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.7e-139 500.4 476 57.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.2e-139 500.0 472 60.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.9e-139 499.6 460 59.1
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.5e-138 497.3 480 59.0
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.5e-138 496.5 469 58.2
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.4e-138 494.6 470 58.3
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.6e-137 493.8 473 57.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.0e-136 489.6 470 57.0
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.0e-136 489.2 477 56.8
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 4.0e-136 489.2 471 57.7
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.4e-135 486.1 471 58.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.4e-135 486.1 484 58.3
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.7e-134 483.8 474 56.8
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 8.3e-134 481.5 601 48.4
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 2.4e-133 479.9 472 56.6
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.4e-133 479.9 472 58.3
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.3e-133 478.8 469 56.3
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 5.3e-133 478.8 463 57.5
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 7.0e-133 478.4 477 55.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 9.1e-133 478.0 478 57.7
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.5e-132 476.1 469 56.1
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.3e-131 474.2 469 56.1
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-130 471.1 470 57.9
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.1e-130 471.1 470 57.9
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.9e-130 470.3 471 56.7
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.5e-130 468.8 468 54.5
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.7e-129 466.5 470 56.8
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 3.4e-127 459.5 467 56.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.3e-126 457.6 473 56.4
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.8e-126 456.4 483 55.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 9.1e-125 451.4 485 54.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 5.5e-122 442.2 468 54.9
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.5e-122 441.4 468 55.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.6e-121 440.7 468 54.7
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 8.0e-121 438.3 478 54.0
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.8e-120 437.2 481 54.9
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.2e-119 434.5 481 54.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.4e-119 433.0 480 53.3
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 4.4e-119 432.6 544 49.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 7.5e-119 431.8 505 50.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.7e-118 430.6 466 53.4
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.7e-115 420.6 471 51.0
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 5.0e-115 419.1 365 58.4
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.3e-114 416.4 469 51.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.0e-113 411.8 434 55.8
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.0e-111 407.1 500 48.6
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.4e-111 406.4 527 46.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.7e-110 404.1 467 49.5
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.7e-110 404.1 347 59.9
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 3.7e-110 402.9 492 50.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.9e-109 400.6 477 50.1
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.1e-109 399.4 481 49.1
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 7.8e-108 395.2 475 49.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.3e-107 394.4 476 48.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.3e-107 394.4 478 48.7
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.7e-107 394.0 476 48.3
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.3e-107 393.7 483 48.4
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.5e-106 391.0 484 49.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 3.3e-106 389.8 480 51.2
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.6e-105 386.3 372 59.4
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.6e-105 386.3 469 48.6
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 4.7e-105 386.0 477 47.8
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 4.7e-105 386.0 493 46.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 6.2e-105 385.6 480 47.9
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.2e-105 385.6 476 50.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 8.0e-105 385.2 482 47.5
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.4e-104 384.4 471 48.6
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.1e-104 383.3 480 49.2
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 3.1e-104 383.3 465 49.0
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.0e-104 382.9 480 49.0
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.2e-104 382.5 483 48.2
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.2e-104 382.5 467 48.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.8e-104 382.1 484 47.1
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 6.8e-104 382.1 481 48.4
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 6.8e-104 382.1 454 49.3
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 8.9e-104 381.7 469 48.0
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.5e-103 380.9 481 48.0
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.6e-103 380.2 480 47.7
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.6e-103 380.2 486 47.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 7.5e-103 378.6 427 49.9
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.2e-102 377.1 427 49.9
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.9e-102 376.7 465 48.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.7e-102 376.3 481 48.4
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 4.9e-102 375.9 464 48.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 4.1e-101 372.9 486 45.9
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.6e-100 370.9 459 47.9
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.5e-100 369.8 467 46.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 7.8e-100 368.6 469 46.7
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.3e-99 367.9 468 47.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.7e-99 367.5 466 46.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 6.6e-99 365.5 425 49.2
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 5.6e-98 362.5 371 56.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 5.6e-98 362.5 468 47.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.8e-96 357.5 279 67.4
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 6.8e-96 355.5 474 46.8
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 9.9e-95 351.7 477 45.5
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.1e-93 348.2 469 45.2
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.9e-90 337.4 426 43.9
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.1e-89 334.0 308 57.1
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.2e-89 332.4 447 45.4
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.2e-87 328.2 449 43.7
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.0e-87 327.4 434 46.1
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 5.8e-87 325.9 463 43.2
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.3e-82 310.1 368 46.2
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.3e-81 308.1 436 43.6
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.3e-81 308.1 414 43.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.2e-81 305.8 454 43.4
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 8.1e-81 305.4 374 48.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.9e-77 294.3 385 49.4
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.2e-76 291.6 310 50.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 6.6e-75 285.8 381 43.0
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 6.2e-73 279.3 241 60.2
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-72 278.5 382 43.2
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-72 278.5 375 48.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.4e-72 277.3 360 45.0
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.5e-71 274.6 468 40.6
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.1e-68 264.2 212 63.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.1e-67 259.6 343 45.2
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.7e-67 259.2 310 45.5
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-66 257.7 310 45.5
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 6.9e-64 249.2 415 38.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 2.3e-59 234.2 366 41.5
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 9.6e-58 228.8 375 38.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.8e-57 227.3 295 42.4
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.8e-57 226.5 363 42.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 8.2e-57 225.7 304 41.4
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.8e-56 224.6 144 73.6
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.3e-56 223.0 401 36.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-54 218.0 267 40.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.9e-53 214.5 343 41.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-52 210.7 227 50.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 5.7e-50 203.0 267 44.9
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.2e-49 201.1 202 52.0
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.1e-48 197.2 317 41.3
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 4.1e-48 196.8 321 37.4
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.5e-47 194.9 261 44.1
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.4e-45 188.3 305 38.7
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 7.2e-37 159.5 139 55.4
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.1e-36 157.9 102 74.5
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 4.1e-32 143.7 244 38.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 9.1e-32 142.5 216 40.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.0e-26 124.8 106 58.5
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.2e-25 121.3 76 75.0
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.1e-24 119.0 192 38.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.8e-22 110.5 203 35.0
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.5e-21 108.6 80 63.8
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.5e-21 107.8 196 34.2
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.5e-18 96.3 88 55.7
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 3.7e-17 94.0 72 62.5
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 4.8e-17 93.6 62 72.6
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.5e-15 87.4 128 42.2
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.3e-09 68.9 52 59.6
GSVIVG01001936001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.2e-09 68.2 77 62.3
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 5.0e-06 57.0 34 76.5


User provided reference genes

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