Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.6e-180 636.0 325 100.0
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 8.2e-132 474.2 274 85.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 6.3e-124 448.0 277 83.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.8e-123 446.4 277 82.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.7e-108 396.7 231 84.8
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.5e-96 356.3 272 71.0
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 4.3e-96 355.5 271 68.6
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.2e-93 347.4 265 69.8
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 2.0e-93 346.7 272 69.1
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.0e-93 346.7 267 68.5
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.6e-93 346.3 264 67.4
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 4.4e-93 345.5 242 71.9
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 7.5e-93 344.7 269 67.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.4e-91 339.7 263 69.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 9.2e-91 337.8 265 66.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 9.2e-91 337.8 267 67.8
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.6e-90 337.0 280 64.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.7e-90 336.3 268 66.4
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 7.8e-90 334.7 270 69.3
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 7.8e-90 334.7 234 71.4
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.3e-89 334.0 285 63.9
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.7e-89 333.6 268 65.3
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 6.6e-89 331.6 271 65.7
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.6e-88 328.6 271 64.6
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 5.6e-88 328.6 220 75.0
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 5.6e-88 328.6 270 64.8
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.6e-88 328.6 243 70.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.6e-87 327.0 267 64.4
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.6e-87 325.9 273 64.5
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.7e-87 325.5 240 69.6
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 4.7e-87 325.5 243 69.5
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 6.2e-87 325.1 259 66.4
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 8.1e-87 324.7 272 65.8
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 8.1e-87 324.7 289 60.2
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.4e-86 323.9 243 69.5
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.4e-86 323.9 275 64.4
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.4e-86 323.9 245 69.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.8e-86 323.6 233 67.8
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 4.0e-86 322.4 281 62.6
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 8.9e-86 321.2 266 63.2
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.5e-85 320.5 266 62.4
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.0e-85 320.1 272 64.0
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.6e-85 319.7 253 64.4
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 2.6e-85 319.7 266 63.2
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.4e-85 319.3 282 59.6
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.4e-85 318.9 193 82.4
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 4.4e-85 318.9 231 70.1
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.5e-85 318.2 272 63.6
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 9.8e-85 317.8 236 68.6
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 9.8e-85 317.8 209 75.6
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 9.8e-85 317.8 224 73.2
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-84 317.4 277 61.7
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.7e-84 317.0 278 59.0
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.7e-84 317.0 276 61.6
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 2.2e-84 316.6 258 64.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.9e-84 315.5 271 63.5
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 6.4e-84 315.1 228 71.9
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-83 314.3 232 68.5
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.1e-83 314.3 258 63.6
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.4e-83 313.9 217 74.2
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.9e-83 313.5 219 72.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.9e-83 313.5 209 74.2
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.9e-83 313.5 270 62.6
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.4e-83 313.2 270 61.5
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.2e-83 312.8 243 67.1
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 3.2e-83 312.8 270 61.1
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 5.4e-83 312.0 264 62.9
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 5.4e-83 312.0 246 65.4
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 7.1e-83 311.6 219 72.6
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 7.1e-83 311.6 271 64.2
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 9.2e-83 311.2 219 69.4
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.6e-82 310.5 266 65.0
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.1e-82 310.1 226 71.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.7e-82 309.7 263 59.7
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.3e-81 307.4 204 76.5
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.3e-81 307.4 204 76.5
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 2.3e-81 306.6 245 66.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.9e-81 305.8 206 74.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 5.1e-81 305.4 245 66.5
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 6.6e-81 305.1 264 62.5
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-80 304.3 228 69.7
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.5e-80 303.9 268 63.4
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.5e-80 303.9 226 69.9
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.9e-80 303.5 206 74.3
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.9e-80 303.5 206 74.3
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.9e-80 303.5 193 79.3
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.5e-80 303.1 218 69.3
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.5e-80 303.1 276 60.9
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 4.3e-80 302.4 273 60.1
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 4.3e-80 302.4 273 60.8
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.3e-80 302.4 244 66.4
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.3e-80 302.4 218 69.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.5e-80 301.2 271 62.7
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.8e-79 299.7 193 77.2
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 3.6e-79 299.3 280 58.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.8e-78 297.0 201 72.1
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.8e-78 295.0 268 62.3
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.2e-77 294.3 281 60.9
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.0e-77 293.5 226 65.5
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 2.0e-77 293.5 278 60.8
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 4.4e-77 292.4 193 75.6
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.8e-77 292.0 202 73.8
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 7.6e-77 291.6 215 69.8
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 2.9e-76 289.7 194 75.3
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.4e-75 286.6 220 68.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.6e-74 283.9 177 79.7
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.7e-74 283.1 193 72.5
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 2.7e-74 283.1 222 66.7
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 7.8e-74 281.6 245 60.0
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 3.9e-73 279.3 208 68.3
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 8.6e-73 278.1 193 71.5
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 3.3e-72 276.2 177 79.1
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 4.3e-72 275.8 198 70.2
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 5.6e-72 275.4 173 76.3
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.8e-71 273.1 280 55.7
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 4.7e-71 272.3 173 77.5
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 8.1e-71 271.6 200 68.0
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 8.1e-71 271.6 283 54.1
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 4.0e-70 269.2 217 63.1
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.1e-67 261.2 260 57.7
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.8e-66 255.0 179 71.5
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.3e-65 253.4 238 57.1
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.5e-64 250.8 261 52.9
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 7.3e-64 248.4 184 70.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.1e-59 234.6 268 48.9
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.2e-58 231.1 221 59.7
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-56 223.8 237 56.1
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.5e-56 223.4 165 66.1
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.5e-56 223.4 165 66.1
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 4.0e-54 216.1 131 80.2
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 9.0e-54 214.9 275 49.5
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 9.9e-53 211.5 177 63.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 6.4e-52 208.8 271 49.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 3.0e-49 199.9 201 57.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 8.4e-44 181.8 206 48.1
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.0e-42 175.6 106 79.2
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.8e-39 166.0 186 48.4
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 3.1e-38 163.3 114 71.9
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 7.9e-34 148.7 96 78.1
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.5e-32 143.7 211 44.5
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.7e-31 139.8 87 77.0
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 9.1e-30 135.2 168 47.6
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.2e-26 124.8 229 34.1
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.1e-24 118.2 144 49.3
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.5e-24 117.9 217 37.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 4.4e-24 116.3 138 50.7
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 6.3e-23 112.5 190 37.4
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 4.5e-21 106.3 70 70.0
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.3e-20 104.8 212 34.0
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 4.7e-18 96.3 140 45.0
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.2e-15 87.4 66 65.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.1e-14 83.2 201 31.3
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 5.0e-12 76.3 65 61.5
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 5.0e-12 76.3 113 45.1
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-07 61.2 47 66.0
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 5.3e-06 56.2 56 53.6
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 5.3e-06 56.2 56 53.6


User provided reference genes

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