Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 7.2e-73 277.3 158 100.0
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.7e-32 141.7 108 75.9
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.0e-30 136.3 108 73.1
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 7.5e-30 134.4 107 72.0
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 2.6e-22 109.4 105 60.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 4.9e-21 105.1 115 55.7
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.4e-20 102.8 107 56.1
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 3.2e-20 102.4 96 60.4
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 9.2e-20 100.9 106 58.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 9.2e-20 100.9 106 58.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.2e-19 100.5 100 58.0
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.2e-19 100.5 98 62.2
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.6e-19 100.1 100 56.0
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 3.5e-19 99.0 100 59.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.0e-18 97.4 99 56.6
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.7e-18 96.7 101 60.4
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 6.6e-18 94.7 107 52.3
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.6e-18 94.4 107 52.3
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.9e-17 93.2 107 49.5
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.9e-17 93.2 100 56.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 3.3e-17 92.4 99 56.6
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 4.3e-17 92.0 107 48.6
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.3e-17 91.3 99 56.6
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 7.3e-17 91.3 59 76.3
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.2e-16 90.5 99 55.6
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.6e-16 90.1 108 49.1
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.1e-16 89.7 102 51.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.8e-16 89.4 99 52.5
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.8e-16 89.4 91 58.2
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 4.7e-16 88.6 88 59.1
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.2e-16 88.2 109 51.4
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.2e-16 88.2 99 54.5
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.4e-15 87.0 57 78.9
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.1e-15 85.9 103 49.5
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.1e-15 85.9 107 47.7
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 4.0e-15 85.5 107 48.6
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 4.0e-15 85.5 60 68.3
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.0e-15 85.5 105 43.8
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 5.2e-15 85.1 60 71.7
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 5.2e-15 85.1 59 71.2
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 5.2e-15 85.1 93 52.7
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 5.2e-15 85.1 104 50.0
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 5.2e-15 85.1 104 50.0
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 5.2e-15 85.1 99 52.5
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 5.2e-15 85.1 95 52.6
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 6.8e-15 84.7 59 67.8
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 6.8e-15 84.7 95 51.6
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.9e-15 84.3 99 50.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 8.9e-15 84.3 59 69.5
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 8.9e-15 84.3 109 47.7
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.2e-14 84.0 108 50.0
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.2e-14 84.0 94 51.1
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 1.5e-14 83.6 107 46.7
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.5e-14 83.6 105 46.7
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.5e-14 83.6 107 47.7
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.5e-14 83.6 107 47.7
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-14 83.6 60 70.0
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.5e-14 83.6 104 48.1
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.0e-14 83.2 108 46.3
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 2.0e-14 83.2 100 57.0
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.0e-14 83.2 60 66.7
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.6e-14 82.8 104 50.0
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.6e-14 82.8 108 47.2
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.6e-14 82.8 59 66.1
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.4e-14 82.0 99 51.5
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.8e-14 81.6 59 71.2
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.8e-14 81.6 79 51.9
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.8e-14 81.6 79 51.9
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 7.5e-14 81.3 53 73.6
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 7.5e-14 81.3 107 46.7
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 9.8e-14 80.9 91 51.6
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 9.8e-14 80.9 63 69.8
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.3e-13 80.5 60 66.7
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.3e-13 80.5 100 50.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.3e-13 80.5 107 51.4
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.3e-13 80.5 107 47.7
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.3e-13 80.5 94 51.1
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.7e-13 80.1 60 66.7
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.7e-13 80.1 60 66.7
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 1.7e-13 80.1 60 66.7
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.7e-13 80.1 60 66.7
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.7e-13 80.1 101 49.5
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.2e-13 79.7 60 66.7
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.2e-13 79.7 59 66.1
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.2e-13 79.7 60 68.3
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.9e-13 79.3 104 46.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.9e-13 79.3 60 65.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.9e-13 79.3 60 65.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.9e-13 79.3 100 48.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 2.9e-13 79.3 52 75.0
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 3.7e-13 79.0 60 65.0
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.7e-13 79.0 58 62.1
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 4.9e-13 78.6 54 72.2
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 6.4e-13 78.2 56 73.2
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.4e-13 78.2 99 50.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 8.3e-13 77.8 61 65.6
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 8.3e-13 77.8 56 71.4
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 8.3e-13 77.8 99 50.5
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-12 77.4 92 52.2
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-12 77.4 91 52.7
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.4e-12 77.0 107 44.9
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.4e-12 77.0 99 49.5
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.9e-12 76.6 107 44.9
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 4.1e-12 75.5 60 65.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.1e-12 75.5 60 65.0
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 7.1e-12 74.7 95 51.6
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 9.2e-12 74.3 96 45.8
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.2e-11 73.9 59 67.8
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.6e-11 73.6 92 50.0
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 1.6e-11 73.6 99 45.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 2.7e-11 72.8 99 46.5
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.7e-11 72.8 99 45.5
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 2.7e-11 72.8 58 67.2
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 2.7e-11 72.8 63 58.7
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 2.7e-11 72.8 92 46.7
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.0e-11 71.6 104 43.3
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 6.0e-11 71.6 94 44.7
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 7.8e-11 71.2 60 58.3
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 7.8e-11 71.2 107 45.8
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.0e-10 70.9 53 67.9
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.7e-10 70.1 96 52.1
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 2.3e-10 69.7 57 66.7
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.3e-10 69.7 57 66.7
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 2.3e-10 69.7 98 44.9
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 3.0e-10 69.3 99 44.4
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 3.9e-10 68.9 40 85.0
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 3.9e-10 68.9 40 85.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 3.9e-10 68.9 56 66.1
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 5.1e-10 68.6 110 42.7
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 8.6e-10 67.8 58 56.9
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.5e-09 67.0 61 52.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.5e-09 67.0 53 64.2
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.3e-09 65.9 36 86.1
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.3e-09 65.5 103 43.7
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.6e-09 65.1 36 86.1
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 7.3e-09 64.7 53 58.5
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 1.6e-08 63.5 53 58.5
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 2.8e-08 62.8 56 57.1
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 6.2e-08 61.6 159 32.1
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 6.2e-08 61.6 60 56.7
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 6.2e-08 61.6 56 55.4
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-07 60.5 40 70.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-07 60.5 40 70.0
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.4e-07 60.5 40 70.0
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.3e-07 59.7 159 31.4
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.3e-07 59.7 159 31.4
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.9e-07 57.8 60 55.0
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.9e-07 57.8 58 50.0
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.5e-06 57.0 93 40.9
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 3.4e-06 55.8 31 87.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 3.4e-06 55.8 57 52.6
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 4.4e-06 55.5 27 92.6
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 4.4e-06 55.5 59 54.2
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 5.8e-06 55.1 30 90.0
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.8e-06 55.1 51 58.8
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.8e-06 55.1 62 43.5
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.8e-06 55.1 62 43.5
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 5.8e-06 55.1 30 90.0
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 5.8e-06 55.1 30 90.0
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 7.6e-06 54.7 93 37.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 7.6e-06 54.7 43 60.5


User provided reference genes

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