Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.3e-34 149.1 69 100.0
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.4e-25 119.0 68 76.5
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 3.5e-24 114.4 63 82.5
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 7.8e-24 113.2 69 76.8
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 7.8e-24 113.2 56 92.9
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 7.8e-24 113.2 56 92.9
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 7.8e-24 113.2 56 92.9
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.3e-23 112.5 61 83.6
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.3e-23 112.5 61 83.6
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.3e-23 112.5 68 76.5
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.3e-23 112.5 59 84.7
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 3.9e-23 110.9 64 76.6
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 5.1e-23 110.5 57 87.7
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 5.1e-23 110.5 67 77.6
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 5.1e-23 110.5 67 79.1
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 6.6e-23 110.2 64 76.6
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 6.6e-23 110.2 60 81.7
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 6.6e-23 110.2 64 79.7
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 6.6e-23 110.2 63 79.4
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 6.6e-23 110.2 59 83.1
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.5e-22 109.0 64 75.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.9e-22 108.6 59 81.4
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.9e-22 108.6 64 78.1
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 2.5e-22 108.2 56 87.5
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.5e-22 108.2 64 73.4
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 2.5e-22 108.2 57 86.0
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.5e-22 108.2 57 84.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 3.3e-22 107.8 57 84.2
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 3.3e-22 107.8 57 86.0
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 3.3e-22 107.8 57 84.2
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 4.3e-22 107.5 59 79.7
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 2.1e-21 105.1 60 75.0
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 2.8e-21 104.8 58 81.0
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 4.7e-21 104.0 57 80.7
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 4.7e-21 104.0 64 73.4
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 4.7e-21 104.0 60 75.0
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 6.2e-21 103.6 54 85.2
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 8.1e-21 103.2 57 77.2
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 8.1e-21 103.2 63 73.0
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.1e-20 102.8 60 75.0
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 1.1e-20 102.8 61 73.8
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.4e-20 102.4 54 85.2
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.8e-20 102.1 58 74.1
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.8e-20 102.1 56 78.6
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 3.1e-20 101.3 62 74.2
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 3.1e-20 101.3 58 75.9
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 3.1e-20 101.3 57 77.2
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 4.0e-20 100.9 57 77.2
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.0e-20 100.9 61 75.4
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 5.2e-20 100.5 64 67.2
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 5.2e-20 100.5 64 67.2
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 5.2e-20 100.5 64 67.2
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 5.2e-20 100.5 64 67.2
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 5.2e-20 100.5 65 72.3
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 5.2e-20 100.5 64 73.4
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 6.9e-20 100.1 64 67.2
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 6.9e-20 100.1 60 76.7
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.2e-19 99.4 61 70.5
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.2e-19 99.4 61 70.5
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.2e-19 99.4 64 67.2
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.5e-19 99.0 64 67.2
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.5e-19 99.0 64 67.2
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.5e-19 99.0 62 69.4
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.5e-19 99.0 59 71.2
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 1.5e-19 99.0 61 70.5
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 1.5e-19 99.0 61 70.5
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.5e-19 99.0 61 70.5
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 2.0e-19 98.6 64 70.3
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.6e-19 98.2 61 68.9
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.6e-19 98.2 64 65.6
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 2.6e-19 98.2 65 70.8
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 2.6e-19 98.2 55 80.0
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 3.4e-19 97.8 61 70.5
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 3.4e-19 97.8 62 69.4
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 3.4e-19 97.8 62 69.4
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 3.4e-19 97.8 62 69.4
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 3.4e-19 97.8 62 69.4
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 3.4e-19 97.8 62 69.4
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.4e-19 97.8 61 67.2
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.4e-19 97.8 61 68.9
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 4.4e-19 97.4 61 68.9
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.4e-19 97.4 50 88.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 4.4e-19 97.4 61 68.9
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 5.8e-19 97.1 62 67.7
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 5.8e-19 97.1 61 68.9
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 7.6e-19 96.7 66 65.2
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 9.9e-19 96.3 57 71.9
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 9.9e-19 96.3 66 65.2
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.3e-18 95.9 64 65.6
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 1.3e-18 95.9 60 70.0
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.3e-18 95.9 48 85.4
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.7e-18 95.5 64 64.1
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 2.2e-18 95.1 50 86.0
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 2.2e-18 95.1 55 74.5
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 2.2e-18 95.1 56 75.0
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.2e-18 95.1 64 62.5
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.9e-18 94.7 64 62.5
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 2.9e-18 94.7 60 73.3
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 4.9e-18 94.0 61 68.9
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 4.9e-18 94.0 61 68.9
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 6.4e-18 93.6 59 67.8
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 6.4e-18 93.6 52 80.8
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 6.4e-18 93.6 51 80.4
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.4e-18 93.2 54 75.9
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.4e-18 93.2 54 75.9
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.1e-17 92.8 51 80.4
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.0e-15 86.3 61 67.2
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 3.9e-15 84.3 62 61.3
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 8.7e-15 83.2 51 72.5
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.1e-14 82.8 45 82.2
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.5e-14 82.4 51 72.5
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.9e-14 82.0 46 76.1
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 4.3e-14 80.9 52 69.2
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 7.3e-14 80.1 61 59.0
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 4.8e-13 77.4 48 68.8
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-12 76.3 53 62.3
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 2.6e-11 71.6 60 58.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.4e-11 71.2 54 55.6
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 1.3e-10 69.3 45 64.4
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 4.9e-10 67.4 44 63.6
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.4e-09 65.9 36 77.8
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.9e-09 65.5 54 53.7
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.2e-09 64.7 47 63.8
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 2.1e-08 62.0 53 52.8
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.8e-07 58.9 55 47.3
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.8e-07 58.9 48 52.1
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.8e-07 58.9 48 52.1
Nitab4.5_0003439g0030 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-06 56.2 54 53.7
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 7.4e-06 53.5 28 78.6


User provided reference genes

Program Settings