Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 8.2e-106 387.1 202 100.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.0e-75 286.2 202 73.3
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 3.7e-74 282.0 202 71.8
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 6.4e-58 228.0 199 56.3
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.4e-57 226.9 200 53.5
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 3.0e-55 219.2 200 52.0
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.1e-54 217.2 199 53.3
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.9e-54 216.5 199 53.8
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 5.6e-54 214.9 199 54.3
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 7.3e-54 214.5 199 53.8
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 2.1e-53 213.0 200 51.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 6.2e-53 211.5 200 50.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 3.4e-51 205.7 200 50.0
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 7.6e-51 204.5 199 49.2
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.9e-50 201.8 200 49.5
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 3.2e-49 199.1 195 47.2
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 4.1e-49 198.7 192 51.0
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 5.4e-49 198.4 198 48.5
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 9.2e-49 197.6 199 47.7
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 7.8e-48 194.5 199 49.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.3e-47 193.7 196 48.5
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 2.3e-47 193.0 200 46.5
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.3e-47 193.0 200 48.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.5e-46 190.3 192 49.0
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.5e-46 189.5 201 47.8
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.3e-46 189.1 200 47.0
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 9.6e-46 187.6 201 46.8
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.2e-45 187.2 200 47.5
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 3.6e-45 185.7 184 50.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 6.2e-45 184.9 198 45.5
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 8.1e-45 184.5 192 49.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.4e-44 183.7 200 46.0
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.4e-44 183.7 198 45.5
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.8e-44 183.3 198 46.5
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.4e-44 183.0 198 46.5
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.4e-44 183.0 198 46.5
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 2.4e-44 183.0 192 49.0
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 2.4e-44 183.0 191 49.2
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 2.0e-43 179.9 193 48.7
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.4e-43 179.1 198 45.5
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 3.4e-43 179.1 198 47.5
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 2.9e-42 176.0 192 46.9
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.1e-41 174.1 200 43.5
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.4e-41 173.7 199 42.7
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 3.2e-41 172.6 199 44.7
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 9.3e-41 171.0 199 42.2
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.2e-40 170.6 200 43.0
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 7.8e-40 167.9 199 41.7
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 3.0e-39 166.0 199 41.2
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 5.1e-39 165.2 198 41.9
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.9e-38 163.3 191 41.9
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 7.3e-38 161.4 199 40.2
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.6e-37 159.1 199 39.7
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 3.6e-37 159.1 213 42.3
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 4.4e-35 152.1 200 41.0
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 5.8e-35 151.8 201 39.3
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 2.2e-34 149.8 199 37.2
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 2.1e-32 143.3 270 34.4
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 3.9e-31 139.0 199 35.2
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 3.9e-31 139.0 199 35.7
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 3.9e-31 139.0 199 35.7
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.1e-30 137.5 199 34.7
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 2.1e-29 133.3 197 34.5
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 8.1e-29 131.3 107 65.4
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 8.1e-29 131.3 194 39.2
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.8e-28 130.2 198 35.4
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.1e-28 129.4 186 35.5
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 6.9e-28 128.3 193 36.8
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 6.9e-28 128.3 199 36.7
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 5.8e-27 125.2 199 36.7
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.7e-26 123.6 199 34.7
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.4e-25 119.8 198 35.9
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.2e-24 117.5 193 35.2
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.3e-23 114.0 107 47.7
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.3e-23 113.2 91 56.0
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 6.7e-23 111.7 148 38.5
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.3e-22 109.0 107 45.8
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 4.3e-22 109.0 107 49.5
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 5.6e-22 108.6 191 37.2
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 9.6e-22 107.8 169 37.3
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 8.1e-21 104.8 155 37.4
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 1.4e-20 104.0 107 46.7
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.8e-20 103.6 113 46.0
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 3.1e-20 102.8 107 47.7
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.0e-19 100.1 107 47.7
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 2.6e-19 99.8 143 39.2
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 3.4e-19 99.4 184 34.2
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 5.8e-19 98.6 107 43.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.3e-18 97.4 107 46.7
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.9e-18 96.3 107 44.9
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.9e-18 96.3 107 45.8
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.8e-18 95.9 100 48.0
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 4.9e-18 95.5 107 45.8
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 4.9e-18 95.5 107 43.9
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 6.5e-18 95.1 86 51.2
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.4e-17 94.0 108 46.3
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.9e-17 93.6 101 43.6
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.5e-17 93.2 93 44.1
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 2.5e-17 93.2 186 32.3
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 7.1e-17 91.7 107 41.1
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 7.1e-17 91.7 86 50.0
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 7.1e-17 91.7 100 46.0
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 9.3e-17 91.3 107 40.2
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.7e-16 89.7 74 58.1
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.8e-15 87.0 107 41.1
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.3e-15 86.7 127 39.4
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.0e-15 86.3 107 41.1
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 6.7e-15 85.1 86 48.8
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 8.7e-15 84.7 69 53.6
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.1e-14 84.3 184 29.9
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.5e-14 84.0 107 41.1
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.5e-14 84.0 58 63.8
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 2.5e-14 83.2 107 42.1
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 4.3e-14 82.4 83 44.6
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-13 80.9 79 45.6
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.6e-13 80.5 83 43.4
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 2.1e-13 80.1 55 63.6
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 2.1e-13 80.1 64 56.2
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.1e-13 80.1 57 61.4
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.8e-13 79.7 79 45.6
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.8e-13 79.7 79 45.6
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 4.8e-13 79.0 84 46.4
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 6.2e-13 78.6 117 38.5
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 6.2e-13 78.6 192 26.6
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 8.2e-13 78.2 108 38.9
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 8.2e-13 78.2 58 63.8
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.4e-12 77.4 57 59.6
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.8e-12 77.0 139 33.1
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 3.1e-12 76.3 61 55.7
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 4.1e-12 75.9 102 39.2
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 4.1e-12 75.9 55 60.0
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 5.3e-12 75.5 84 51.2
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 1.2e-11 74.3 153 32.0
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.5e-11 73.9 126 36.5
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 5.8e-11 72.0 51 62.7
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 5.8e-11 72.0 51 62.7
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.2e-10 70.1 117 35.9
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.8e-10 69.3 57 59.6
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 6.5e-10 68.6 100 37.0
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 6.5e-10 68.6 101 38.6
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 8.4e-10 68.2 107 35.5
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 1.4e-09 67.4 100 36.0
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.5e-09 66.6 101 36.6
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.2e-09 65.9 73 43.8
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.2e-08 64.3 100 35.0
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 3.5e-08 62.8 100 33.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 6.1e-08 62.0 100 35.0
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 1.3e-07 60.8 100 32.0
AagrBONN_evm.TU.Sc2ySwM_344.2603 Anthoceros agrestis HOM05D004264 ORTHO05D004680 4.3e-06 55.8 172 21.5


User provided reference genes

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