Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 0.0e+00 1942.2 987 100.0
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 0.0e+00 1374.0 1020 73.0
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 0.0e+00 1297.3 1012 70.8
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 0.0e+00 1192.2 1033 65.2
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 0.0e+00 1181.8 1100 61.6
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 0.0e+00 1167.9 1013 65.2
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 8.2e-308 1060.4 1045 60.1
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.2e-183 647.1 683 56.1
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.2e-159 567.4 382 73.3
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 4.0e-137 493.4 1350 31.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.0e-100 370.9 681 39.8
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 1.9e-91 341.7 691 36.9
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.6e-91 339.3 677 37.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 9.6e-91 339.3 685 38.4
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 4.8e-90 337.0 692 36.4
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 5.6e-83 313.5 678 35.8
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.6e-82 312.0 667 36.0
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.4e-81 308.9 652 36.5
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.9e-81 306.6 679 37.1
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.5e-80 305.4 679 37.0
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 7.1e-78 296.6 711 34.3
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 6.0e-77 293.5 665 34.7
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.3e-74 285.8 793 32.5
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.3e-74 285.8 739 34.0
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 1.1e-73 282.7 700 34.9
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.2e-72 279.3 716 34.1
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.0e-72 278.5 700 34.6
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 3.4e-72 277.7 651 34.7
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 3.4e-72 277.7 680 34.7
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.3e-71 275.8 658 36.3
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 3.9e-68 264.2 673 34.0
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 9.7e-67 259.6 672 33.6
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.6e-64 251.5 742 32.3
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.4e-64 251.1 739 32.9
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.3e-63 249.2 678 33.2
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.7e-63 248.8 732 33.7
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.9e-63 248.1 689 32.9
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 5.0e-63 247.3 697 33.3
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.1e-62 246.1 709 33.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.9e-62 245.4 715 32.0
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.6e-61 242.3 669 34.1
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 3.6e-61 241.1 721 32.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 5.1e-60 237.3 669 32.9
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 8.8e-60 236.5 686 34.0
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 3.7e-58 231.1 710 31.0
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 6.3e-58 230.3 669 32.9
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.2e-56 226.1 742 31.0
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 4.5e-56 224.2 688 34.0
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 6.5e-55 220.3 666 32.4
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.1e-54 219.5 687 32.9
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 9.4e-54 216.5 674 32.3
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.6e-53 214.5 679 32.4
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 6.1e-53 213.8 679 32.1
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 6.1e-53 213.8 887 29.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 7.9e-53 213.4 846 29.1
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 8.8e-52 209.9 679 32.0
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.4e-51 207.6 691 32.4
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.7e-51 207.2 685 31.8
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.8e-50 204.1 679 32.1
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 3.1e-49 201.4 663 32.1
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.7e-47 195.7 675 32.1
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 8.5e-47 193.4 660 31.8
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 1.9e-46 192.2 700 31.0
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.5e-46 191.8 672 32.1
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 2.1e-45 188.7 671 30.1
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 8.0e-45 186.8 670 30.4
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.0e-44 186.4 733 27.6
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 4.0e-44 184.5 682 30.4
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 5.2e-44 184.1 668 30.7
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 6.3e-42 177.2 721 28.8
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 4.1e-41 174.5 509 33.8
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 4.5e-40 171.0 482 35.1
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 1.0e-39 169.9 480 35.4
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 8.5e-39 166.8 635 32.0
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 1.9e-38 165.6 233 44.2
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 9.4e-38 163.3 677 31.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.0e-36 159.8 650 29.7
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.8e-36 159.1 679 30.6
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 6.3e-34 150.6 743 27.5
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.4e-33 148.7 732 27.3
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.5e-32 144.8 742 27.5
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 4.5e-24 117.9 646 27.6
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.3e-23 116.3 750 27.9
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.0e-20 106.7 246 36.6
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 2.6e-19 102.1 424 28.8
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.6e-19 102.1 275 32.7
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 3.7e-18 98.2 659 26.3
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 1.2e-16 93.2 432 28.9
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 5.9e-16 90.9 495 27.1
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.0e-15 90.1 398 28.6
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 1.5e-14 86.3 398 28.9
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 4.3e-14 84.7 338 26.6
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 7.3e-14 84.0 458 27.3
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 7.3e-14 84.0 398 28.4
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 2.1e-13 82.4 400 28.2
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.0e-12 80.1 800 23.2
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.3e-12 79.0 682 24.3
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.3e-10 73.2 367 28.1
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.7e-10 72.8 592 24.7
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 4.9e-10 71.2 542 23.8
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 3.2e-09 68.6 540 25.4
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 4.1e-09 68.2 441 25.2
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 3.5e-08 65.1 336 28.3
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 8.6e-07 60.5 364 28.6
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 8.6e-07 60.5 364 28.6
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 2.5e-06 58.9 640 24.1
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 7.3e-06 57.4 334 29.3


User provided reference genes

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