Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 0.0e+00 1095.5 562 100.0
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 4.1e-264 914.4 564 82.6
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 1.2e-263 912.9 564 82.4
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 1.5e-250 869.4 562 79.9
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 4.6e-231 804.7 562 75.1
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 1.1e-229 800.0 562 73.7
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 1.5e-229 799.7 561 73.4
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 5.3e-227 791.2 561 72.0
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 3.4e-226 788.5 561 71.3
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 4.4e-226 788.1 561 71.8
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 7.6e-226 787.3 557 72.5
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 6.4e-225 784.3 561 72.0
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 9.3e-224 780.4 558 72.4
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.2e-223 780.0 561 71.1
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 2.1e-223 779.2 561 72.0
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 2.1e-223 779.2 562 71.4
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.7e-223 778.9 562 71.4
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.8e-223 777.3 576 70.1
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 7.8e-223 777.3 562 71.0
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 2.3e-222 775.8 559 72.6
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 5.1e-222 774.6 560 70.5
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 1.1e-221 773.5 561 71.3
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 5.6e-221 771.2 561 71.7
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.3e-220 770.0 564 70.9
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 2.1e-220 769.2 557 71.3
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 2.1e-220 769.2 557 71.3
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 2.1e-220 769.2 563 71.2
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 4.8e-220 768.1 557 70.7
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 6.2e-220 767.7 561 70.8
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 6.2e-220 767.7 561 70.4
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.4e-219 765.8 561 70.4
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.4e-219 765.8 560 70.7
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 4.0e-219 765.0 561 70.2
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 4.0e-219 765.0 561 70.8
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.0e-219 765.0 563 70.7
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 6.9e-219 764.2 561 71.5
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 3.2e-216 755.4 561 69.2
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.2e-216 755.4 578 69.0
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 4.2e-216 755.0 561 69.2
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 9.3e-216 753.8 561 69.3
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 1.2e-215 753.4 561 69.7
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 4.6e-215 751.5 557 70.4
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 6.0e-215 751.1 556 71.0
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.0e-214 750.4 563 70.5
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 1.3e-214 750.0 561 70.2
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 2.3e-214 749.2 557 69.5
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 3.9e-214 748.4 561 68.8
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 5.1e-214 748.0 561 69.3
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 1.9e-213 746.1 557 68.9
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 3.3e-213 745.3 560 68.6
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 1.3e-212 743.4 560 68.8
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 1.3e-212 743.4 563 70.2
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 2.8e-212 742.3 563 68.0
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 4.8e-212 741.5 578 68.3
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 1.4e-211 740.0 569 68.7
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 5.3e-211 738.0 557 69.7
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 6.9e-211 737.6 536 69.8
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 4.5e-210 734.9 588 65.1
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 5.8e-210 734.6 563 67.1
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 2.9e-209 732.3 561 68.3
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 8.4e-209 730.7 559 67.1
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 1.4e-208 729.9 561 68.1
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 4.2e-208 728.4 561 67.9
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 7.1e-208 727.6 588 65.5
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 9.3e-208 727.2 557 67.0
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 1.2e-207 726.9 570 67.2
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 1.6e-207 726.5 561 67.9
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 6.7e-206 721.1 555 67.7
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 8.7e-206 720.7 564 65.1
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.1e-205 720.3 543 70.2
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.5e-205 719.9 559 67.6
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.5e-205 719.9 555 67.6
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 1.9e-205 719.5 586 64.7
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 5.7e-205 718.0 563 68.4
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.1e-204 716.1 563 67.1
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 3.7e-204 715.3 563 67.1
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 8.2e-204 714.1 559 67.8
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.1e-203 713.8 559 65.5
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.1e-203 713.8 561 67.2
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.4e-203 713.4 561 66.8
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.4e-203 713.4 561 66.8
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 5.3e-203 711.4 568 67.4
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 3.4e-202 708.8 561 67.0
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 2.9e-201 705.7 561 67.0
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 3.2e-200 702.2 510 70.4
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.0e-198 697.2 563 66.4
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 3.0e-198 695.7 561 65.2
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 3.9e-198 695.3 537 66.7
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 2.5e-197 692.6 560 64.8
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.5e-197 692.6 519 69.0
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 1.4e-195 686.8 560 64.1
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 6.9e-195 684.5 560 63.6
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.5e-194 683.3 558 65.6
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 2.0e-194 682.9 561 63.8
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 2.6e-194 682.6 499 70.9
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 2.2e-193 679.5 560 63.8
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 6.5e-193 677.9 560 63.6
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 8.5e-193 677.6 561 64.0
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 4.2e-192 675.2 559 63.5
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 9.4e-192 674.1 558 64.3
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 1.6e-191 673.3 562 63.9
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 1.6e-191 673.3 562 63.9
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.1e-191 672.9 561 63.5
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 1.8e-187 659.8 537 62.0
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 4.1e-187 658.7 495 68.1
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.0e-185 654.1 498 68.3
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 4.7e-183 645.2 553 61.3
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 7.4e-181 637.9 551 60.3
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 1.2e-178 630.6 496 64.9
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 1.8e-174 616.7 545 61.3
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 4.7e-167 592.0 562 59.1
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 7.0e-163 578.2 428 70.3
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 1.0e-158 564.3 459 64.7
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 7.5e-157 558.1 509 60.1
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 3.8e-153 545.8 568 52.6
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 8.3e-148 528.1 555 52.6
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 7.8e-146 521.5 566 51.6
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 1.6e-143 513.8 541 53.0
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 6.8e-142 508.4 402 67.9
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 1.2e-141 507.7 572 50.3
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 5.8e-141 505.4 403 63.8
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 7.0e-139 498.4 361 70.1
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 4.7e-135 485.7 459 57.3
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 3.5e-114 416.4 408 57.1
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 7.8e-114 415.2 298 72.1
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 3.3e-112 409.8 546 46.5
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 4.4e-109 399.4 590 41.7
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 4.6e-106 389.4 570 43.9
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 5.6e-104 382.5 549 43.0
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 6.4e-100 369.0 282 67.7
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.5e-69 268.1 200 68.5
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 9.7e-64 248.8 488 36.9
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 2.0e-56 224.6 377 42.7
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 1.5e-51 208.4 283 41.7
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 4.8e-47 193.4 142 71.8
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 3.8e-44 183.7 142 69.7
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.0e-40 171.4 294 39.1
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.2e-39 167.9 148 58.1
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 2.2e-39 167.9 192 53.6
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 2.3e-36 157.9 110 70.0
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 5.7e-32 143.3 98 70.4
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 1.2e-29 135.6 120 56.7
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.0e-28 131.0 88 76.1
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 8.9e-25 119.4 157 44.6
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 7.0e-22 109.8 87 64.4
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 1.2e-16 92.4 88 58.0
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 1.5e-16 92.0 77 61.0
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 4.4e-16 90.5 203 33.5
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.3e-15 89.0 73 63.0
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.6e-13 82.0 87 51.7


User provided reference genes

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