Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 8.9e-117 423.7 227 100.0
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 1.5e-84 316.6 206 84.0
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 3.4e-84 315.5 207 83.6
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 1.2e-68 263.8 207 69.6
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.5e-68 263.5 206 69.9
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 7.6e-68 261.2 206 68.9
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 8.4e-67 257.7 197 72.1
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 5.5e-66 255.0 206 68.9
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 4.6e-65 251.9 204 68.1
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 6.1e-65 251.5 204 68.1
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 1.3e-64 250.4 202 67.3
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 1.8e-64 250.0 204 67.2
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 3.9e-64 248.8 198 68.7
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 6.7e-64 248.1 201 69.2
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 6.7e-64 248.1 205 66.8
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.1e-63 247.3 199 67.8
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.1e-63 247.3 206 65.0
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.1e-63 247.3 206 65.0
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.5e-63 246.9 196 69.4
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 1.5e-63 246.9 202 66.8
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.9e-63 246.5 205 64.4
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 1.9e-63 246.5 208 66.8
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.5e-63 246.1 199 67.3
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 2.5e-63 246.1 197 68.5
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.3e-63 245.7 199 67.8
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 3.3e-63 245.7 206 64.1
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 5.7e-63 245.0 215 62.8
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 5.7e-63 245.0 215 62.8
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 5.7e-63 245.0 203 69.0
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 5.7e-63 245.0 207 64.7
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 5.7e-63 245.0 208 66.3
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 7.4e-63 244.6 203 69.5
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 7.4e-63 244.6 203 69.5
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 7.4e-63 244.6 199 67.3
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 7.4e-63 244.6 208 65.9
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 9.7e-63 244.2 203 69.0
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 9.7e-63 244.2 198 65.7
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 1.3e-62 243.8 188 70.2
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 1.3e-62 243.8 188 70.2
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 1.3e-62 243.8 191 66.5
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.3e-62 243.8 206 63.6
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 1.6e-62 243.4 203 66.5
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.6e-62 243.4 196 67.3
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 2.2e-62 243.0 191 70.2
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 3.7e-62 242.3 205 63.4
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 4.8e-62 241.9 205 67.8
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 4.8e-62 241.9 200 68.0
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 6.3e-62 241.5 215 62.8
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 8.2e-62 241.1 188 69.7
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 8.2e-62 241.1 202 67.8
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 8.2e-62 241.1 200 67.0
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 8.2e-62 241.1 205 63.9
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.1e-61 240.7 188 69.1
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.1e-61 240.7 215 62.3
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.4e-61 240.4 188 69.1
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 1.8e-61 240.0 202 65.8
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.4e-61 239.6 207 65.2
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 4.1e-61 238.8 188 69.1
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 4.1e-61 238.8 187 69.5
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 4.1e-61 238.8 205 63.4
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 5.3e-61 238.4 199 65.8
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 6.9e-61 238.0 216 61.1
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 6.9e-61 238.0 207 63.3
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.5e-60 236.9 197 68.0
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.5e-60 236.9 201 65.7
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 2.0e-60 236.5 204 63.2
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 2.6e-60 236.1 203 68.0
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 2.6e-60 236.1 224 58.9
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 3.4e-60 235.7 200 64.0
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 5.9e-60 235.0 203 62.1
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 5.9e-60 235.0 199 63.8
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 1.0e-59 234.2 197 64.0
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 1.3e-59 233.8 213 62.4
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 1.3e-59 233.8 204 62.7
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.9e-59 232.6 196 63.3
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 2.9e-59 232.6 215 62.8
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 3.8e-59 232.3 188 67.0
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 5.0e-59 231.9 205 64.4
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 6.5e-59 231.5 201 64.7
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 1.9e-58 229.9 208 63.5
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 1.9e-58 229.9 200 63.0
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 2.5e-58 229.6 198 65.7
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 4.2e-58 228.8 200 62.5
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 9.4e-58 227.6 197 61.4
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 2.7e-57 226.1 212 59.0
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 7.9e-57 224.6 206 61.7
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 1.0e-56 224.2 243 56.4
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 1.4e-56 223.8 208 59.6
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 1.8e-56 223.4 217 60.4
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 2.5e-55 219.5 199 60.8
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 3.3e-55 219.2 203 60.1
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 7.4e-55 218.0 197 61.9
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 1.7e-54 216.9 196 61.2
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 2.8e-54 216.1 197 60.9
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 6.3e-54 214.9 199 61.8
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 6.3e-54 214.9 202 59.4
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 1.4e-53 213.8 201 60.2
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 2.9e-51 206.1 162 69.1
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.9e-50 203.4 170 61.8
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 2.5e-50 203.0 187 59.4
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 6.1e-49 198.4 161 65.8
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 6.1e-49 198.4 161 65.8
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 5.7e-47 191.8 170 61.8
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 2.8e-46 189.5 157 62.4
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 2.4e-45 186.4 141 72.3
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 4.1e-45 185.7 369 37.4
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.0e-40 171.0 160 57.5
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 2.3e-40 169.9 199 51.8
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 3.3e-39 166.0 112 80.4
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 5.3e-37 158.7 199 46.7
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.0e-36 156.8 123 69.9
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.6e-36 156.4 128 63.3
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 6.5e-35 151.8 117 70.9
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 6.5e-35 151.8 128 60.9
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.5e-34 150.6 195 46.2
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 1.2e-33 147.5 121 65.3
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 1.2e-33 147.5 115 69.6
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 1.3e-30 137.5 199 43.7
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.1e-29 132.5 127 59.1
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 4.7e-25 119.0 196 35.7
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 5.2e-24 115.5 143 49.0
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 8.3e-22 108.2 129 55.0
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 2.7e-20 103.2 68 76.5
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.8e-19 99.4 74 71.6
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 1.4e-16 90.9 75 65.3
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 6.8e-16 88.6 80 60.0
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 4.4e-15 85.9 73 64.4
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 4.9e-14 82.4 55 72.7
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 9.2e-13 78.2 187 31.0
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.9e-11 72.8 47 76.6
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 5.0e-11 72.4 48 72.9


User provided reference genes

Program Settings