Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.8e-47 191.4 86 100.0
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 3.6e-42 174.5 86 93.0
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 3.6e-42 174.5 86 91.9
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.0e-41 172.9 86 89.5
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.0e-41 172.9 86 89.5
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 3.9e-41 171.0 86 90.7
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 4.4e-40 167.5 86 89.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 5.7e-40 167.2 86 87.2
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 5.7e-40 167.2 84 85.7
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 7.4e-40 166.8 85 88.2
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 7.4e-40 166.8 84 85.7
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 9.7e-40 166.4 84 85.7
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 6.3e-39 163.7 79 89.9
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 8.2e-39 163.3 84 83.3
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.8e-38 162.2 85 84.7
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.8e-38 162.2 87 85.1
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 4.1e-38 161.0 85 83.5
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 5.3e-38 160.6 85 83.5
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 5.3e-38 160.6 86 82.6
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 5.3e-38 160.6 86 83.7
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 7.0e-38 160.2 86 83.7
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 7.0e-38 160.2 87 83.9
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 9.1e-38 159.8 87 83.9
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 9.1e-38 159.8 85 83.5
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 9.1e-38 159.8 85 83.5
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 9.1e-38 159.8 86 80.2
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 9.1e-38 159.8 89 82.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.2e-37 159.5 86 82.6
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.5e-37 159.1 84 82.1
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.5e-37 159.1 84 82.1
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.5e-37 159.1 84 82.1
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.0e-37 158.7 86 82.6
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.0e-37 158.7 84 83.3
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.0e-37 158.7 84 83.3
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 84.9
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 3.5e-37 157.9 85 82.4
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.3e-36 156.0 87 80.5
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 1.7e-36 155.6 88 84.1
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.7e-36 155.6 84 84.5
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.7e-36 155.6 86 82.6
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.7e-36 155.6 86 81.4
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.7e-36 155.6 85 82.4
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 2.2e-36 155.2 84 81.0
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.2e-36 155.2 85 82.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.2e-36 155.2 85 78.8
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.9e-36 154.8 84 84.5
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 2.9e-36 154.8 84 84.5
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 3.8e-36 154.5 86 82.6
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 3.8e-36 154.5 84 81.0
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 5.0e-36 154.1 84 83.3
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 5.0e-36 154.1 84 83.3
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.0e-36 154.1 86 81.4
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 5.0e-36 154.1 86 81.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 6.5e-36 153.7 84 76.2
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 6.5e-36 153.7 84 76.2
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.5e-36 153.7 86 79.1
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 6.5e-36 153.7 85 81.2
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 8.5e-36 153.3 86 80.2
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.1e-35 152.9 86 77.9
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.1e-35 152.9 85 80.0
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.9e-35 152.1 85 78.8
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.9e-35 152.1 85 78.8
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.9e-35 152.1 90 80.0
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 2.5e-35 151.8 85 82.4
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.5e-35 151.8 85 80.0
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.2e-35 150.2 86 76.7
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 7.2e-35 150.2 85 80.0
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 9.4e-35 149.8 85 80.0
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 9.4e-35 149.8 85 78.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 9.4e-35 149.8 85 78.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 9.4e-35 149.8 85 78.8
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.2e-34 149.4 84 79.8
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.6e-34 149.1 89 76.4
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 2.7e-34 148.3 83 79.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.7e-34 148.3 83 79.5
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 8.0e-34 146.7 77 81.8
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 8.0e-34 146.7 84 81.0
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.4e-33 146.0 84 77.4
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.8e-33 145.6 84 78.6
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.8e-33 145.6 78 82.1
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.8e-33 145.6 84 77.4
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 2.3e-33 145.2 85 75.3
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 2.3e-33 145.2 84 78.6
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 3.0e-33 144.8 85 74.1
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 3.9e-33 144.4 76 81.6
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 3.9e-33 144.4 76 81.6
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 3.9e-33 144.4 85 75.3
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 5.2e-33 144.1 84 77.4
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 6.7e-33 143.7 87 75.9
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 8.8e-33 143.3 89 75.3
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.1e-32 142.9 84 76.2
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.5e-32 142.5 84 76.2
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-32 142.1 76 80.3
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-32 142.1 84 76.2
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 5.7e-32 140.6 84 76.2
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 7.4e-32 140.2 84 76.2
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 7.4e-32 140.2 79 81.0
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 7.4e-32 140.2 85 72.9
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 7.4e-32 140.2 82 76.8
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 9.7e-32 139.8 84 73.8
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 9.7e-32 139.8 85 74.1
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 9.7e-32 139.8 85 74.1
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.3e-31 139.4 84 73.8
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-31 139.0 76 78.9
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 6.3e-31 137.1 85 75.3
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 6.3e-31 137.1 74 78.4
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.4e-30 136.0 76 77.6
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.6e-29 131.7 103 63.1
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.0e-28 129.8 63 88.9
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 3.2e-27 124.8 155 45.2
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.1e-26 122.1 63 82.5
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 3.0e-25 118.2 60 85.0
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 8.8e-25 116.7 85 65.9
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 5.7e-24 114.0 61 80.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-22 109.4 63 76.2
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 1.8e-22 109.0 62 80.6
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 1.8e-22 109.0 81 63.0
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.4e-22 108.6 60 80.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 4.1e-22 107.8 62 75.8
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 7.0e-22 107.1 61 83.6
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 7.0e-22 107.1 60 83.3
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 9.1e-22 106.7 63 81.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 9.1e-22 106.7 60 80.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 9.1e-22 106.7 66 71.2
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.2e-21 106.3 66 77.3
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.6e-21 105.9 61 75.4
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-20 103.2 61 77.0
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-20 103.2 61 77.0
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.3e-20 102.8 60 78.3
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.3e-20 102.8 59 79.7
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.3e-20 102.8 62 75.8
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 3.2e-19 98.2 59 76.3
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 5.5e-19 97.4 61 75.4
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 7.2e-19 97.1 59 76.3
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 9.4e-19 96.7 61 63.9
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.6e-18 95.9 61 73.8
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.7e-18 94.4 53 81.1
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.1e-18 94.0 61 73.8
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-17 92.8 55 78.2
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 5.2e-17 90.9 61 67.2
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.7e-15 85.9 61 67.2
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.8e-14 82.4 65 55.4
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 7.0e-14 80.5 79 54.4
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.9e-13 77.4 39 84.6
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 2.5e-11 72.0 70 48.6


User provided reference genes

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