Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 0.0e+00 1472.2 760 100.0
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1330.9 761 89.6
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1308.1 760 88.0
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1302.0 761 87.5
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 3.3e-293 1011.5 753 69.6
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.7e-292 1009.2 738 69.8
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 1.3e-289 999.6 754 68.0
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.5e-289 997.3 754 67.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 9.4e-288 993.4 743 68.2
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 1.4e-286 989.6 726 70.1
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 4.4e-285 984.6 855 61.9
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 1.1e-283 979.9 752 67.8
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 1.2e-282 976.5 751 67.6
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 2.7e-282 975.3 753 66.3
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 3.5e-282 974.9 763 66.7
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 1.3e-281 973.0 754 66.8
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 1.7e-281 972.6 749 66.9
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 1.1e-280 969.9 754 66.0
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 4.2e-280 968.0 749 66.4
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 1.6e-279 966.1 749 67.7
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 6.1e-279 964.1 749 67.3
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 6.1e-279 964.1 752 67.3
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 2.0e-277 959.1 748 65.5
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 2.8e-276 955.3 744 65.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 8.3e-276 953.7 748 65.1
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 8.3e-276 953.7 747 67.1
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.1e-275 953.4 743 66.4
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 1.8e-275 952.6 752 67.0
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 7.0e-275 950.7 744 66.8
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 9.1e-275 950.3 747 66.5
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 5.9e-274 947.6 753 65.2
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 5.9e-274 947.6 755 65.0
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 3.3e-272 941.8 757 64.3
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 2.1e-271 939.1 746 64.5
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.6e-271 938.3 743 65.4
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 4.0e-270 934.9 743 64.9
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 3.4e-269 931.8 747 64.7
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 7.5e-269 930.6 746 65.0
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 1.3e-268 929.9 746 63.5
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 1.1e-267 926.8 748 63.8
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.8e-267 926.0 742 63.1
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 1.8e-267 926.0 745 63.4
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 1.8e-267 926.0 757 64.6
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 3.2e-267 925.2 746 63.5
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.1e-267 924.9 747 64.5
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 9.2e-267 923.7 749 62.3
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 5.9e-266 921.0 737 64.7
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 2.3e-265 919.1 749 62.1
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 2.5e-264 915.6 754 62.7
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 2.1e-263 912.5 734 64.9
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 3.6e-263 911.8 744 63.3
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 2.3e-262 909.1 739 62.2
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 8.9e-262 907.1 745 63.6
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 2.2e-260 902.5 764 62.7
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 3.7e-260 901.7 749 62.1
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 2.4e-259 899.0 756 62.2
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 2.4e-259 899.0 752 63.2
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 4.1e-259 898.3 751 62.8
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 4.6e-258 894.8 752 63.3
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 7.8e-258 894.0 754 63.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 1.0e-257 893.6 751 62.3
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 2.3e-257 892.5 785 59.9
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 3.0e-257 892.1 751 63.4
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 1.5e-256 889.8 749 60.5
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 1.5e-256 889.8 760 62.2
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 4.3e-256 888.3 750 61.5
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 4.3e-256 888.3 769 63.2
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 7.3e-256 887.5 753 62.4
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 1.6e-255 886.3 752 61.7
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 2.1e-255 885.9 758 62.1
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 2.1e-255 885.9 758 62.1
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 2.8e-255 885.6 753 62.3
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.4e-254 883.2 760 62.4
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 2.6e-253 879.0 745 61.7
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 3.4e-253 878.6 743 61.8
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 2.9e-252 875.5 752 60.9
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 4.9e-252 874.8 778 60.2
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 1.9e-251 872.8 786 58.4
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 1.2e-250 870.2 744 60.5
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 1.3e-249 866.7 757 60.9
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.7e-249 866.3 751 60.5
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 8.6e-249 864.0 752 60.0
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.3e-248 862.1 746 59.9
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 4.7e-247 858.2 753 60.3
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 1.8e-246 856.3 752 60.4
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.3e-246 855.9 752 60.8
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 6.8e-246 854.4 705 61.8
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 8.9e-246 854.0 732 59.8
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 9.9e-245 850.5 752 60.1
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.2e-242 843.6 750 59.6
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 9.3e-235 817.4 743 56.3
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 4.8e-231 805.1 747 56.8
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 5.5e-219 765.0 560 71.2
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 5.8e-213 745.0 841 49.8
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 6.7e-209 731.5 754 53.2
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 2.6e-197 693.0 648 58.8
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 8.5e-196 688.0 561 63.3
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 8.8e-185 651.4 609 56.5
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 4.5e-157 559.3 753 41.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.9e-156 556.6 751 44.1
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.6e-146 524.2 748 40.5
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.2e-144 518.1 417 61.6
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.7e-135 486.5 744 40.1
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 3.7e-135 486.5 737 39.1
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 2.1e-130 470.7 379 62.5
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.9e-111 407.1 332 61.4
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.2e-110 403.7 419 50.1
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.8e-90 337.4 342 52.6
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.1e-89 334.0 248 69.0
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.7e-87 328.2 378 49.7
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.0e-75 288.1 232 65.1
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 3.3e-75 287.3 303 51.2
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 2.4e-73 281.2 746 29.6
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-72 276.6 422 39.1
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 7.9e-69 266.2 197 68.5
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.2e-64 252.3 239 58.6
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.2e-59 235.7 195 58.5
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.2e-56 225.7 774 27.0
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.9e-40 170.2 131 69.5
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 3.3e-38 164.5 179 49.2
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 4.4e-35 154.1 108 71.3
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 4.6e-32 144.1 119 57.1
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 6.2e-21 107.1 85 65.9
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.3e-20 105.1 64 75.0
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 8.9e-20 103.2 118 50.8
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 3.4e-19 101.3 120 44.2
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 9.9e-19 99.8 68 70.6
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 2.2e-18 98.6 678 22.4
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 9.2e-17 93.2 94 55.3
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 7.8e-16 90.1 77 61.0
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.6e-14 84.0 76 52.6
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 9.9e-11 73.2 52 65.4
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 1.3e-10 72.8 46 73.9
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.0e-07 61.6 79 40.5
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 6.6e-07 60.5 57 50.9


User provided reference genes

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