Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 1.4e-111 406.4 218 100.0
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 1.5e-105 386.3 191 94.8
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 1.5e-105 386.3 189 95.2
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 1.5e-105 386.3 191 93.7
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 3.9e-101 371.7 189 91.0
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 5.0e-101 371.3 189 91.5
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 5.0e-101 371.3 217 80.6
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 6.6e-101 370.9 191 89.0
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 8.6e-101 370.5 218 78.9
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 8.6e-101 370.5 218 81.2
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.1e-100 370.2 191 88.5
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 1.5e-100 369.8 189 91.0
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 1.9e-100 369.4 188 89.9
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 1.9e-100 369.4 189 89.4
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 2.5e-100 369.0 193 88.1
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 2.5e-100 369.0 191 89.0
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 7.3e-100 367.5 184 90.8
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 1.2e-99 366.7 186 90.9
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.2e-99 366.7 186 90.9
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 1.2e-99 366.7 218 90.4
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 2.1e-99 365.9 218 86.2
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.8e-99 365.5 189 89.4
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.7e-99 364.8 189 88.4
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 4.7e-99 364.8 188 89.9
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.4e-98 363.2 186 89.2
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.4e-98 363.2 186 89.8
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.4e-98 363.2 191 85.3
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 3.1e-98 362.1 184 89.1
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 3.1e-98 362.1 191 85.9
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 5.2e-98 361.3 182 89.0
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 8.9e-98 360.5 189 86.2
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 1.2e-97 360.1 184 90.8
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.2e-97 360.1 186 88.2
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.5e-97 359.8 189 87.8
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.5e-97 359.8 189 87.8
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 2.0e-97 359.4 184 89.1
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 3.4e-97 358.6 189 85.7
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 4.4e-97 358.2 183 89.1
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 5.8e-97 357.8 218 77.1
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 7.5e-97 357.5 189 86.8
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 7.5e-97 357.5 186 87.1
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 9.8e-97 357.1 188 86.7
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 9.8e-97 357.1 185 87.6
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 1.7e-96 356.3 191 85.3
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 1.7e-96 356.3 185 87.6
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 2.2e-96 355.9 188 85.6
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 2.2e-96 355.9 189 86.2
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 2.9e-96 355.5 188 85.6
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 2.9e-96 355.5 191 85.9
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 2.9e-96 355.5 188 86.7
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 3.7e-96 355.1 192 85.4
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 4.9e-96 354.8 191 85.3
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 4.9e-96 354.8 188 85.6
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 4.9e-96 354.8 189 84.7
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 4.9e-96 354.8 189 84.7
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 4.9e-96 354.8 208 81.2
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 6.4e-96 354.4 218 77.5
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 8.3e-96 354.0 189 85.7
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 8.3e-96 354.0 191 84.3
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 1.4e-95 353.2 187 85.0
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 1.9e-95 352.8 189 85.2
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 1.9e-95 352.8 191 84.3
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 3.2e-95 352.1 189 85.2
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 3.2e-95 352.1 188 84.6
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 5.4e-95 351.3 189 85.2
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 7.0e-95 350.9 191 83.2
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 7.0e-95 350.9 189 84.1
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 9.2e-95 350.5 189 84.1
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 9.2e-95 350.5 188 86.2
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.2e-94 350.1 189 85.2
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 2.0e-94 349.4 187 85.0
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 2.0e-94 349.4 189 83.6
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 2.0e-94 349.4 189 84.1
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 2.0e-94 349.4 189 84.7
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 3.5e-94 348.6 268 69.0
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 3.5e-94 348.6 188 85.6
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 4.6e-94 348.2 189 83.6
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 4.6e-94 348.2 189 85.2
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 6.0e-94 347.8 216 74.1
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 7.8e-94 347.4 216 74.1
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 7.8e-94 347.4 216 75.0
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 1.3e-93 346.7 193 82.4
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.3e-93 346.7 189 84.7
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 1.7e-93 346.3 216 75.0
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 1.7e-93 346.3 216 75.0
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 2.3e-93 345.9 189 84.7
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 3.0e-93 345.5 187 84.0
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 3.0e-93 345.5 187 84.0
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 3.0e-93 345.5 187 84.0
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 3.0e-93 345.5 187 84.0
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 3.9e-93 345.1 216 73.6
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 3.9e-93 345.1 216 74.1
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 5.0e-93 344.7 189 82.0
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 5.0e-93 344.7 191 81.7
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 8.6e-93 344.0 216 74.5
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 8.6e-93 344.0 216 74.5
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 8.6e-93 344.0 191 80.6
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 8.6e-93 344.0 189 84.1
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.5e-92 343.2 190 81.1
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.5e-92 343.2 189 84.1
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 1.9e-92 342.8 216 74.1
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 2.5e-92 342.4 188 83.0
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 2.5e-92 342.4 189 84.7
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.5e-92 342.4 213 76.5
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 3.3e-92 342.0 183 85.2
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.3e-92 341.7 190 81.1
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 4.3e-92 341.7 187 83.4
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.2e-91 340.1 190 79.5
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 1.6e-91 339.7 189 82.0
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 2.1e-91 339.3 188 80.9
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 4.7e-91 338.2 192 79.7
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 6.2e-91 337.8 188 80.9
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 1.1e-90 337.0 189 81.5
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.4e-90 336.7 218 71.1
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 4.0e-90 335.1 191 78.0
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 5.2e-90 334.7 188 81.4
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 6.8e-90 334.3 172 88.4
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 8.9e-90 334.0 189 80.4
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 1.5e-89 333.2 189 83.1
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 3.4e-89 332.0 179 83.8
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 4.4e-89 331.6 186 81.2
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 4.4e-89 331.6 186 81.2
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 7.5e-89 330.9 208 76.0
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 4.9e-88 328.2 198 77.3
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 6.4e-88 327.8 189 77.2
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 1.1e-87 327.0 190 76.8
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 1.4e-87 326.6 179 82.1
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 2.4e-87 325.9 226 68.6
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 5.4e-87 324.7 186 77.4
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 3.5e-86 322.0 187 77.5
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 7.8e-86 320.9 186 76.3
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 3.9e-85 318.5 173 82.1
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 6.6e-85 317.8 223 67.7
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.6e-83 313.2 168 83.3
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 3.6e-83 312.0 188 76.6
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 4.0e-82 308.5 192 75.0
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 1.3e-77 293.5 162 82.1
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.3e-76 288.9 189 69.3
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 3.3e-76 288.9 181 71.3
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 8.1e-75 284.3 181 69.1
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 6.9e-74 281.2 189 68.3
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 8.9e-74 280.8 183 65.6
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.2e-70 270.4 181 68.0
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.6e-70 270.0 177 68.4
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 1.9e-68 263.1 188 70.7
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 4.8e-67 258.5 185 62.7
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.7e-64 250.0 213 61.5
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.6e-62 243.4 182 61.0
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.3e-61 240.4 160 66.9
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 2.0e-57 226.5 124 81.5
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.4e-57 225.7 202 56.4
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 1.5e-49 200.3 181 51.4
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 3.4e-49 199.1 182 51.1
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.7e-48 196.8 181 53.6
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 2.7e-46 189.5 105 77.1
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 1.4e-42 177.2 107 81.3
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 1.4e-42 177.2 87 89.7
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 5.3e-42 175.3 102 79.4
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 1.5e-41 173.7 108 74.1
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 7.6e-41 171.4 176 44.3
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 1.0e-40 171.0 91 84.6
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-39 167.5 91 80.2
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 1.4e-39 167.2 91 82.4
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 2.5e-39 166.4 88 86.4
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 2.1e-38 163.3 90 82.2
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 2.5e-36 156.4 92 79.3
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 7.4e-36 154.8 84 83.3
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 3.4e-33 146.0 75 88.0
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 7.7e-33 144.8 80 82.5
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 7.2e-31 138.3 67 92.5
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 9.4e-31 137.9 73 83.6
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 2.7e-30 136.3 148 48.0
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 3.0e-29 132.9 75 82.7
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 5.3e-26 122.1 62 85.5
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.4e-23 114.0 95 56.8
Hma1.2p1_0302F.1_g118750 Hydrangea macrophylla HOM05D003659 ORTHO05D004298 1.7e-19 100.5 61 78.7
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 2.2e-19 100.1 122 41.0
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 4.8e-19 99.0 53 83.0
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 1.2e-17 94.4 51 74.5
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 6.1e-14 82.0 45 82.2
BcaB08g35155 Brassica carinata HOM05D003659 ORTHO05D004298 8.2e-11 71.6 130 33.8
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 1.1e-10 71.2 46 67.4
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 5.3e-10 68.9 153 30.7
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 9.1e-10 68.2 195 29.7
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 3.8e-08 62.8 32 81.2
SHI20750 Sapria himalayana HOM05D003659 ORTHO05D004298 4.2e-07 59.3 48 58.3
SHI48633 Sapria himalayana HOM05D003659 ORTHO05D004298 5.5e-07 58.9 48 60.4


User provided reference genes

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